Co-expression analysis

Gene ID GmaAffx.46686.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g07570: APK1A (HF=1e-5)
Module size 10 genes
NF 0.41
%ile 70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.40.95GmaAffx.46686.1.S1_atBQ081277--1e-5At1g07570APK1AO.I.H.G.S.X.
0.5374.20.97Gma.5491.1.S1_atAW309940--1e+1At5g51105unknown proteinO.I.H.G.S.X.
0.5273.10.95Gma.3639.1.S1_atAB083030.1syringolide-induced protein B15-3-5-1e-4At2g38600acid phosphatase class B family proteinO.I.H.G.S.X.
0.4463.30.97GmaAffx.91013.1.S1_s_atCF806738--5e+0At5g51105unknown proteinO.I.H.G.S.X.
0.3346.10.96GmaAffx.4941.1.S1_atBI971689--6e-1At2g31170SYCO ARATHO.I.H.G.S.X.
0.2939.00.95Gma.7325.1.S1_atBI893997--2e+0At1g53625unknown proteinO.I.H.G.S.X.
0.2939.00.97Gma.2457.1.S1_atBI967559--2e+0At1g61795-O.I.H.G.S.X.
0.2532.60.96GmaAffx.89508.1.A1_s_atCK606172--4e-1At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.2430.90.97Gma.11238.1.S1_atBQ454110--3e-121At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)O.I.H.G.S.X.
0.2329.90.97GmaAffx.90026.1.S1_s_atCF805751--5e-18At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.396.2GSM29404796_3095.2F.R9F1L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g07570, orthologous to the query gene, GmaAffx.46686.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g07570837271APK1AProtein kinase capable of phosphorylating tyrosine, serine, and threonine residuesO.I.H.G.S.X.
0.2217.5At1g03590839447catalytic/ protein serine/threonine phosphataseF:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:plasma membrane;PMOFVO.I.H.G.S.X.
0.030.6At4g26610828768D6PKL1 (D6 PROTEIN KINASE LIKE 1)F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAO.I.H.G.S.X.
0.020.4At1g67230843043LINC1 (LITTLE NUCLEI1)Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.O.I.H.G.S.X.
0.020.4At1g35510840444unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.020.4At4g28760828997unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMFO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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