Co-expression analysis

Gene ID GmaAffx.46137.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g29810: dehydratase family (HF=8e-1)
Module size 18 genes
NF 0.25
%ile 50.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5878.80.81GmaAffx.46137.1.S1_atBM093946--8e-1At1g29810dehydratase familyO.I.H.G.S.X.
0.5678.20.84GmaAffx.27727.1.S1_atBI702295--3e+0At3g502102-oxoacid-dependent oxidase, putativeO.I.H.G.S.X.
0.3853.30.90Gma.16567.1.A1_atBU084135--3e+0At3g48330PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.3548.60.94Gma.8776.1.S1_atBI968212--4e-47At1g16720HCF173 (high chlorophyll fluorescence phenotype 173)O.I.H.G.S.X.
0.3346.10.86GmaAffx.42050.1.S1_atBI470918--1e-1At1g31470NFD4 (NUCLEAR FUSION DEFECTIVE 4)O.I.H.G.S.X.
0.3142.20.86Gma.16004.1.S1_atBU548336--1e-29At5g67370unknown proteinO.I.H.G.S.X.
0.3142.20.91Gma.8776.2.S1_atBM892282--3e-22At1g16720HCF173 (high chlorophyll fluorescence phenotype 173)O.I.H.G.S.X.
0.3040.40.87GmaAffx.11231.1.S1_atCD417416--4e-12At4g32590ferredoxin-relatedO.I.H.G.S.X.
0.2939.00.92GmaAffx.3743.1.A1_atBE824162--3e+0At3g25250AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1)O.I.H.G.S.X.
0.2939.00.93Gma.16567.2.S1_atBE331101--2e-9At2g41250haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.2633.90.92Gma.7563.1.S1_atBI968116--3e-24At1g66330senescence-associated family proteinO.I.H.G.S.X.
0.2329.90.92GmaAffx.13732.2.S1_atBI469818--1e-27At5g65460kinesin motor protein-relatedO.I.H.G.S.X.
0.1923.70.94Gma.11167.1.S1_atBE821260--1e-42At5g64940ATATH13O.I.H.G.S.X.
0.1417.50.91GmaAffx.80390.1.S1_atAW620886--3e+0At5g18100CSD3 (copper/zinc superoxide dismutase 3)O.I.H.G.S.X.
0.0912.00.90GmaAffx.921.1.S1_atBU545697--2e-25At5g53160unknown proteinO.I.H.G.S.X.
0.0710.20.88GmaAffx.47759.1.S1_atCD403743--3e+0At1g26140unknown proteinO.I.H.G.S.X.
0.0710.20.87Gma.13035.1.S1_atCD396536--1e+0At4g22165F-box family proteinO.I.H.G.S.X.
0.069.00.90Gma.143.1.S1_atAF022157.1cytochrome P450 71A10-9e-1At4g37340CYP81D3O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.399.5GSM209591mock_0hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
10.199.3GSM209582mock_0hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
10.099.3GSM209590susceptible_48hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
9.099.2GSM170927Rust Innoculated, biological rep2GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stageLink to GEO
8.899.1GSM170926Rust Innoculated, biological rep1GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stageLink to GEO
8.799.1GSM209573mock_0hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
8.099.0GSM209581susceptible_48hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
7.999.0GSM170925V2 Control, biological rep2GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stageLink to GEO
7.999.0GSM209599susceptible_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
7.999.0GSM170924V2 Control, biological rep1GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stageLink to GEO
7.598.9GSM209589resistant_48hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
7.398.9GSM170929Rust Innoculated, biological rep3GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stageLink to GEO
7.198.8GSM209598resistant_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
6.698.7GSM170928V2 Control, biological rep3GSE7108Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stageLink to GEO
5.698.3GSM209580resistant_48hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
5.698.3GSM209587resistant_24hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
5.298.1GSM209597susceptible_24hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
5.298.1GSM209596resistant_24hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.897.9GSM238057Soybean-S03W4-1-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
4.397.5GSM238030Soybean-2601R-2-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
4.197.3GSM209588susceptible_24hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.997.1GSM238058Soybean-S03W4-2-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
3.897.0GSM238059Soybean-S03W4-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
3.496.4GSM209592resistant_6hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.496.4GSM238056Soybean-PS46R-5-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
3.396.2GSM238041Soybean-Bayfield-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
3.396.2GSM238060Soybean-S03W4-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
3.396.2GSM209578resistant_24hours_rep1 *failed QC*GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.095.6GSM238032Soybean-2601R-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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