Co-expression analysis

Gene ID	GmaAffx.45978.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g57560: aspartate/glutamate/uridylate kinase family protein (HF=2e-19)
Module size	9 genes
NF	0.19
%ile	42.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	83.4	0.92	GmaAffx.45978.1.A1_at	BI967636	-	-	2e-19	At3g57560	aspartate/glutamate/uridylate kinase family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.94	Gma.4345.1.S1_at	AW348883	-	-	2e-8	At1g55205	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.95	Gma.5161.1.S1_at	BI971155	-	-	8e-71	At5g20290	40S ribosomal protein S8 (RPS8A)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.95	Gma.14855.1.S1_s_at	BU550191	-	-	3e-43	At4g33680	AGD2 (ABERRANT GROWTH AND DEATH 2)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.94	Gma.5248.1.S1_at	BI893886	-	-	3e+0	At2g25570	binding	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.95	GmaAffx.93056.1.S1_s_at	CF808781	-	-	4e+0	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.95	Gma.4907.1.A1_at	BE659410	-	-	1e-8	At4g11060	MTSSB (mitochondrially targeted single-stranded DNA binding protein)	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.95	Gma.16574.1.S1_at	BE823590	-	-	4e-56	At5g04800	40S ribosomal protein S17 (RPS17D)	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.94	Gma.13620.1.A1_at	CD401752	-	-	7e-1	Atcg00560	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	99.2	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
8.4	99.1	GSM182030	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
8.3	99.1	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.9	99.0	GSM182029	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.7	99.0	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.7	98.7	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.6	98.7	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.6	98.7	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.4	98.6	GSM201115	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.3	98.6	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.2	98.6	GSM201114	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.1	98.5	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.9	98.5	GSM201110	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.9	98.5	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.8	98.4	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.7	98.4	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.3	98.2	GSM201101	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.3	98.2	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.3	98.2	GSM147939	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.2	98.1	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.2	98.1	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.1	98.1	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.0	98.0	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.0	98.0	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.0	98.0	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.0	98.0	GSM147940	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.0	98.0	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.9	98.0	GSM191083	Soybean_Cotyledon_EPD1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.7	97.8	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.7	97.8	GSM147955	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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