Co-expression analysis

Gene ID	GmaAffx.45437.1.S1_at
Gene name	biotin synthase
Homology with Arabidopsis	Similar to At2g43360: BIO2 (BIOTIN AUXOTROPH 2) (HF=7e-21)
Module size	6 genes
NF	0.04
%ile	16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	0.97	GmaAffx.45437.1.S1_at	AI960629	biotin synthase	-	7e-21	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	GmaAffx.91779.1.S1_at	CF807504	glutamate 1-semialdehyde aminotransferase	-	9e-48	At5g63570	GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.97	GmaAffx.54917.1.S1_at	AW666047	-	-	5e+0	At5g43440	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.97	Gma.13032.1.S1_at	BQ629879	-	-	1e-3	At4g26710	ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.97	GmaAffx.52373.2.S1_at	BM308168	-	-	6e-2	At3g18940	clast3-related	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.97	GmaAffx.53048.1.S1_s_at	AW395589	-	-	2e-14	At1g66070	translation initiation factor-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.18363.1.S1_at, orthologous to the query gene, GmaAffx.45437.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.2	Zm.18363.1.S1_at	At2g43360	hypothetical protein LOC100194297	-	8e-13	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	O.I.	H.G.	S.X.	Please select
0.91	99.0	Zm.4020.1.A1_at	At2g43360	hypothetical protein LOC100191912	-	2e-17	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.89	96.8	Zm.4027.1.S1_a_at	At2g43360	hypothetical protein LOC100194227 /// hypothetical protein LOC100272558 /// endo-1,3;1,4-beta-D-glucanase	-	3e+0	At2g02030	F-box family protein	O.I.	H.G.	S.X.	Please select
0.88	96.7	Zm.5491.1.A1_at	At2g43360	-	-	1e-5	At2g37050	kinase	O.I.	H.G.	S.X.	Please select
0.86	96.3	Zm.6638.1.A1_at	At2g43360	esterase	-	4e-1	At3g16100	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)	O.I.	H.G.	S.X.	Please select
0.85	95.9	Zm.8925.1.A1_at	At2g43360	-	-	2e+0	At5g50360	unknown protein	O.I.	H.G.	S.X.	Please select
0.85	95.9	Zm.1019.1.A1_at	At2g43360	actin-depolymerizing factor 5	-	2e-19	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.79	92.8	Zm.9184.1.A1_at	At2g43360	-	-	4e-1	At3g51440	strictosidine synthase family protein	O.I.	H.G.	S.X.	Please select
0.79	92.8	Zm.7368.1.S1_at	At2g43360	ERF/AP2 domain containing transcription factor	-	5e-2	At3g57600	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.79	92.8	Zm.3241.1.A1_at	At2g43360	translation initiation factor eIF-2B beta subunit	-	1e-10	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.79	92.8	Zm.6701.1.A1_at	At2g43360	glutaredoxin 2	-	9e-2	At4g08280	-	O.I.	H.G.	S.X.	Please select
0.78	92.5	Zm.15179.1.A1_at	At2g43360	hypothetical protein LOC100278013	-	3e-1	At5g42930	triacylglycerol lipase	O.I.	H.G.	S.X.	Please select
0.78	92.5	Zm.3462.1.A2_at	At2g43360	-	-	1e-25	At5g08650	GTP-binding protein LepA, putative	O.I.	H.G.	S.X.	Please select
0.78	92.5	Zm.6009.1.A1_s_at	At2g43360	hypothetical protein LOC100274708	-	2e+0	At1g74730	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	91.1	Zm.7437.1.A1_at	At2g43360	-	-	1e+0	At3g58100	PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.76	91.1	Zm.5480.1.A1_at	At2g43360	glycine-rich RNA-binding protein 7	-	5e-1	At2g46000	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	90.8	Zm.737.1.A1_at	At2g43360	cysteine protease	-	2e-23	At5g60360	AALP (Arabidopsis aleurain-like protease)	O.I.	H.G.	S.X.	Please select
0.74	90.3	Zm.7275.1.A1_at	At2g43360	hypothetical protein LOC100275154	-	8e-2	At5g58220	TTL (Transthyretin-Like protein)	O.I.	H.G.	S.X.	Please select
0.71	88.2	Zm.1405.1.S1_at	At2g43360	-	-	3e+0	At4g32080	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	Zm.5458.1.A1_at	At2g43360	starch synthase IIc precursor	-	2e+0	At3g01940	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	Zm.8950.1.A1_at	At2g43360	-	-	1e-17	At2g18230	AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2)	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.4615.2.A1_at	At2g43360	-	-	2e-1	At1g58420	-	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.5721.1.A1_a_at	At2g43360	Hypothetical protein LOC100191423	-	9e-2	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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