CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.45437.1.S1_at

Gene name biotin synthase
Homology with Arabidopsis Similar to At2g43360: BIO2 (BIOTIN AUXOTROPH 2) (HF=7e-21)

Module size 6 genes

NF 0.04

%ile 16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 92.5 0.97 GmaAffx.45437.1.S1_at AI960629 biotin synthase - 7e-21 At2g43360 BIO2 (BIOTIN AUXOTROPH 2) O.I. H.G. S.X.
0.44 63.3 0.97 GmaAffx.91779.1.S1_at CF807504 glutamate 1-semialdehyde aminotransferase - 9e-48 At5g63570 GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE) O.I. H.G. S.X.
0.17 21.2 0.97 GmaAffx.54917.1.S1_at AW666047 - - 5e+0 At5g43440 2-oxoglutarate-dependent dioxygenase, putative O.I. H.G. S.X.
0.03 5.8 0.97 Gma.13032.1.S1_at BQ629879 - - 1e-3 At4g26710 ATP synthase subunit H family protein O.I. H.G. S.X.
0.02 4.5 0.97 GmaAffx.52373.2.S1_at BM308168 - - 6e-2 At3g18940 clast3-related O.I. H.G. S.X.
0.02 4.5 0.97 GmaAffx.53048.1.S1_s_at AW395589 - - 2e-14 At1g66070 translation initiation factor-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g43360, orthologous to the query gene, GmaAffx.45437.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At2g43360 818937 BIO2 (BIOTIN AUXOTROPH 2) Catalyzes the conversion of dethiobiotin to biotin. O.I. H.G. S.X.
0.78 88.6 At1g34430 840346 EMB3003 (embryo defective 3003) F:dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity;P:embryonic development ending in seed dormancy;C:cytosolic ribosome, plasma membrane, chloroplast, chloroplast envelope;OBMFPA O.I. H.G. S.X.
0.70 83.5 At5g35360 833497 CAC2 Encodes biotin carboxylase subunit (CAC2). O.I. H.G. S.X.
0.70 83.5 At5g46290 834671 KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I) 3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA, O.I. H.G. S.X.
0.67 81.6 At2g05990 815152 MOD1 (MOSAIC DEATH 1) Encodes enoyl-ACP reductase a component of the fatty acid synthase complex. A reduced function mutation in this gene, mod1, was found in a screen for premature cell death mutants. Mutant plants have reduced lipid level and pleiotropic morphological defects, including chlorotic and abnormally shaped leaves. O.I. H.G. S.X.
0.64 78.9 At3g25860 822181 LTA2 Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect. O.I. H.G. S.X.
0.61 76.7 At1g01090 839429 PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA) pyruvate dehydrogenase E1 alpha subunit O.I. H.G. S.X.
0.57 73.8 At1g52670 841699 biotin/lipoyl attachment domain-containing protein F:binding;P:unknown;C:chloroplast;BOPM O.I. H.G. S.X.
0.54 69.5 At5g10160 830880 beta-hydroxyacyl-ACP dehydratase, putative F:hydro-lyase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity;P:fatty acid biosynthetic process;C:cell wall, chloroplast, membrane;BOPM O.I. H.G. S.X.
0.46 59.8 At1g30120 839891 PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA) Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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