CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.43069.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g14570: UBX domain-containing protein (HF=4e-7)

Module size 6 genes

NF 0.54

%ile 85.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.99 GmaAffx.43069.1.S1_at AI494747 - - 4e-7 At1g14570 UBX domain-containing protein O.I. H.G. S.X.
0.61 81.8 0.99 Gma.5720.2.S1_a_at BG652626 - - 2e-5 At1g51200 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.50 71.7 0.99 Gma.7528.2.S1_at BM891312 - - 3e-49 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) O.I. H.G. S.X.
0.47 66.6 0.99 GmaAffx.68394.1.S1_at BU082577 - - 3e+0 At5g03660 unknown protein O.I. H.G. S.X.
0.38 53.3 0.99 GmaAffx.91748.1.S1_s_at CF807473 - - 1e-102 At2g01970 endomembrane protein 70, putative O.I. H.G. S.X.
0.33 46.1 0.99 GmaAffx.90621.1.S1_s_at CF806346 - - 4e-50 At2g21270 ubiquitin fusion degradation UFD1 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g14570, orthologous to the query gene, GmaAffx.43069.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.46 59.8 At1g14570 838019 UBX domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. H.G. S.X.
0.53 68.6 At4g36960 829850 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA O.I. H.G. S.X.
0.50 65.3 At2g25740 817117 ATP-dependent protease La (LON) domain-containing protein F:ATP-dependent peptidase activity;P:N-terminal protein myristoylation, ATP-dependent proteolysis;C:cellular_component unknown;BOMPF O.I. H.G. S.X.
0.50 65.3 At4g32660 829401 AME3 Encodes protein kinase AME3. O.I. H.G. S.X.
0.35 41.6 At3g51310 824294 VPS35C (VPS35 HOMOLOG C) Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. O.I. H.G. S.X.
0.33 38.1 At5g46210 834663 CUL4 (CULLIN4) Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1. O.I. H.G. S.X.
0.32 35.7 At1g16010 838171 magnesium transporter CorA-like family protein (MRS2-1) F:metal ion transmembrane transporter activity;P:metal ion transport;C:vacuole, membrane;PFOMBA O.I. H.G. S.X.
0.32 35.7 At1g25420 839128 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMFO O.I. H.G. S.X.
0.31 33.8 At2g28390 817387 SAND family protein F:unknown;P:unknown;C:chloroplast;MFOBPAV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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