Co-expression analysis

Gene ID GmaAffx.42464.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g17710: HDG4 (HOMEODOMAIN GLABROUS 4) (HF=5e-2)
Module size 16 genes
NF 0.34
%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.90.62GmaAffx.42464.1.S1_atBM893519--5e-2At4g17710HDG4 (HOMEODOMAIN GLABROUS 4)O.I.H.G.S.X.
0.4563.90.65Gma.3048.1.S1_a_atBU549235--5e-7At1g17200integral membrane family proteinO.I.H.G.S.X.
0.4463.30.78Gma.13015.1.A1_atCD398822--3e-1At1g75430BLH11 (BEL1-LIKE HOMEODOMAIN 11)O.I.H.G.S.X.
0.3853.30.78Gma.18014.1.S1_a_atCD398126--2e-1At2g42840PDF1 (PROTODERMAL FACTOR 1)O.I.H.G.S.X.
0.3447.20.75GmaAffx.5510.1.S1_s_atBQ079740--8e-1At3g07340basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3346.10.75GmaAffx.17924.1.S1_atBG157338--6e-2At4g37470hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.3243.70.75GmaAffx.69899.1.A1_atBU550129--9e-7At4g12110SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)O.I.H.G.S.X.
0.3142.20.76GmaAffx.59986.1.A1_atBE658693--1e+1Atmg00650-O.I.H.G.S.X.
0.3040.40.69Gma.3043.1.S1_atCD415603--3e+0At4g28170unknown proteinO.I.H.G.S.X.
0.3040.40.71GmaAffx.5510.1.S1_atBQ079740--8e-1At3g07340basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2939.00.77GmaAffx.71683.1.S1_atAW734979--1e-1At2g43018CPuORF17 (Conserved peptide upstream open reading frame 17)O.I.H.G.S.X.
0.2430.90.72Gma.7332.1.S1_atBI945636--2e-19At3g11600unknown proteinO.I.H.G.S.X.
0.2430.90.76GmaAffx.15664.1.S1_atBE607642--8e-1At1g76110high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing proteinO.I.H.G.S.X.
0.2228.10.75GmaAffx.9613.1.S1_atAW459395--1e+1At4g32915-O.I.H.G.S.X.
0.2025.10.87Gma.17974.1.S1_atAW508047--6e+0At5g0385040S ribosomal protein S28 (RPS28B)O.I.H.G.S.X.
0.1619.70.72Gma.9463.1.S1_atCA819159--3e+0At5g57450XRCC3O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.499.5GSM201108Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
12.599.5GSM201096Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
12.499.5GSM201097Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
12.199.5GSM201109Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
11.199.4GSM201113Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
10.699.3GSM201112Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
7.999.0GSM147946Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
7.398.9GSM147947Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
6.598.7GSM182039Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
6.498.6GSM258505Soybean shoot apical meristem, 6 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
6.298.6GSM182040Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
6.298.6GSM147945Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.898.4GSM258504Soybean shoot apical meristem, 4 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
5.898.4GSM258496Vegetative soybean shoot apical meristemGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
5.798.4GSM258502Vegetative shoot apical meristem, replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
5.598.3GSM191078Soybean_Cotyledon_SUS2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.598.3GSM258500Soybean shoot apical meristem, 6 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
5.598.3GSM258499Soybean shoot apical meristem, 4 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
5.498.2GSM258501Soybean shoot apical meristem, 1 short-day treatment replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
5.298.1GSM191084Soybean_Cotyledon_EPD2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.897.9GSM258498Soybean shoot apical meristem, 2 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
4.797.8GSM258503Soybean shoot apical meristem, 2 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
4.797.8GSM258497Soybean Shoot Apical Meristem, 1 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
4.697.7GSM191083Soybean_Cotyledon_EPD1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.597.7GSM182033Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.497.6GSM191077Soybean_Cotyledon_SUS1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.497.6GSM267287Axillary meristem from 10-day-old soybean seedlings GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
4.197.3GSM182034Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.097.2GSM267288Axillary meristem from 10-day-old soybean seedlings repliacte 2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.696.7GSM237068Soy_shoot apical meristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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