Co-expression analysis

Gene ID	GmaAffx.41945.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g26710: BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1) (HF=8e-7)
Module size	6 genes
NF	0.03
%ile	12.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.91	GmaAffx.41945.1.S1_at	BM528194	-	-	8e-7	At2g26710	BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	Gma.12512.1.S1_at	CD392421	-	-	1e+0	At1g11608	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.96	HgAffx.19033.4.A1_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.97	GmaAffx.83815.1.S1_s_at	BG404904	-	-	1e+0	At1g04330	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.97	Gma.8354.1.S1_at	BE658968	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.96	Gma.6150.2.S1_x_at	CD416056	-	-	1e-23	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.7	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the grape gene, 1612218_at, orthologous to the query gene, GmaAffx.41945.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	1612218_at	At2g26710	-	-	5e+0	Atcg00750	-	O.I.	H.G.	S.X.	Please select
0.71	89.5	1619482_at	At2g26710	-	-	5e-3	At2g27385	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	1610305_at	At2g26710	-	-	6e-43	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	O.I.	H.G.	S.X.	Please select
0.62	83.3	1619011_at	At2g26710	hypothetical protein LOC100247295	-	7e-8	At1g04220	KCS2 (3-KETOACYL-COA SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.56	79.4	1614207_at	At2g26710	hypothetical protein LOC100241610	-	2e-38	At3g47340	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.54	75.7	1615898_at	At2g26710	hypothetical protein LOC100247526	-	6e-2	At2g22100	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	1611748_s_at	At2g26710	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1621373_s_at	At2g26710	hypothetical protein LOC100249881	-	1e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1617280_s_at	At2g26710	hypothetical protein LOC100258720	-	5e-3	At2g27385	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	1614517_x_at	At2g26710	-	-	4e-4	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.47	67.7	1609418_s_at	At2g26710	hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538	-	4e+0	At5g35375	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1612089_at	At2g26710	-	-	2e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.	Please select
0.45	64.6	1613074_at	At2g26710	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1607851_at	At2g26710	hypothetical protein LOC100266538	-	9e-2	At1g04660	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1611378_at	At2g26710	hypothetical protein LOC100244478	-	2e-8	At1g60630	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1621559_at	At2g26710	hypothetical protein LOC100262734	-	3e-51	At3g28860	ABCB19	O.I.	H.G.	S.X.	Please select
0.40	57.7	1620061_s_at	At2g26710	-	-	2e-1	At5g50740	metal ion binding	O.I.	H.G.	S.X.	Please select
0.37	51.7	1619772_at	At2g26710	hypothetical protein LOC100260458	-	2e+0	At3g05070	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	1621641_at	At2g26710	hypothetical protein LOC100256711	-	6e-2	At2g32020	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1611732_at	At2g26710	hypothetical protein LOC100257805	-	3e-2	At4g37750	ANT (AINTEGUMENTA)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1620034_at	At2g26710	-	-	4e+0	At5g08410	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1614053_at	At2g26710	hypothetical protein LOC100252212	-	5e-1	At1g58007	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1608586_at	At2g26710	hypothetical protein LOC100241814	-	4e-18	At4g21960	PRXR1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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