Co-expression analysis

Gene ID	GmaAffx.41945.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g26710: BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1) (HF=8e-7)
Module size	6 genes
NF	0.03
%ile	12.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.91	GmaAffx.41945.1.S1_at	BM528194	-	-	8e-7	At2g26710	BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	Gma.12512.1.S1_at	CD392421	-	-	1e+0	At1g11608	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.96	HgAffx.19033.4.A1_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.97	GmaAffx.83815.1.S1_s_at	BG404904	-	-	1e+0	At1g04330	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.97	Gma.8354.1.S1_at	BE658968	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.96	Gma.6150.2.S1_x_at	CD416056	-	-	1e-23	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.7	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.83473.1.S1_at, orthologous to the query gene, GmaAffx.41945.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.2	TaAffx.83473.1.S1_at	At2g26710	-	-	1e+1	At5g53742	-	O.I.	H.G.	S.X.	Please select
0.46	66.8	TaAffx.6658.1.S1_at	At2g26710	-	-	3e+0	At1g26762	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.8084.2.S1_at	At2g26710	-	-	3e-2	At5g02480	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.28142.2.S1_at	At2g26710	-	-	3e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.28146.1.S1_at	At2g26710	-	-	2e+1	At3g12345	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.974.2.S1_at	At2g26710	-	-	5e+0	At3g28956	catalytic/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.5287.1.S1_at	At2g26710	-	-	5e-3	At2g07640	D2,D4-dienoyl-CoA reductase-related	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.28190.2.S1_a_at	At2g26710	-	-	7e-2	At5g07620	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.11430.1.S1_at	At2g26710	-	-	4e+0	At4g39860	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.80253.1.S1_at	At2g26710	-	-	3e-1	At5g05140	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.9049.2.A1_at	At2g26710	-	-	3e-1	At2g19480	NAP1	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.23792.2.A1_at	At2g26710	-	-	3e-6	At4g32040	KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.23270.2.A1_at	At2g26710	-	-	2e+1	At5g22608	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.11134.2.S1_at	At2g26710	-	-	1e+0	At1g23770	F-box family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.78543.1.S1_at	At2g26710	-	-	1e-3	At5g59210	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.84346.1.S1_at	At2g26710	-	-	2e-2	At3g59060	PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.108544.2.S1_x_at	At2g26710	-	-	3e+0	At5g14730	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.1951.2.A1_at	At2g26710	-	-	2e+1	At5g55000	FIP2	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.50694.1.S1_at	At2g26710	-	-	2e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.28386.2.S1_s_at	At2g26710	-	-	8e-1	At5g64180	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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