Co-expression analysis

Gene ID GmaAffx.41945.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g26710: BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1) (HF=8e-7)
Module size 6 genes
NF 0.03
%ile 12.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.91GmaAffx.41945.1.S1_atBM528194--8e-7At2g26710BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)O.I.H.G.S.X.
0.4463.30.97Gma.12512.1.S1_atCD392421--1e+0At1g11608-O.I.H.G.S.X.
0.4057.10.96HgAffx.19033.4.A1_atCK350593--6e-2At1g54410dehydrin family proteinO.I.H.G.S.X.
0.2228.10.97GmaAffx.83815.1.S1_s_atBG404904--1e+0At1g04330unknown proteinO.I.H.G.S.X.
0.013.40.97Gma.8354.1.S1_atBE658968--4e-22At3g03070NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.013.40.96Gma.6150.2.S1_x_atCD416056--1e-23At5g59880ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.696.7GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.43760.1.A1_at, orthologous to the query gene, GmaAffx.41945.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8096.0PtpAffx.43760.1.A1_atAt2g26710--9e-2At2g32080PUR ALPHA-1O.I.H.G.S.X.
0.7393.6PtpAffx.8616.1.A1_atAt2g26710hypothetical protein-2e-28At1g11360universal stress protein (USP) family proteinO.I.H.G.S.X.
0.5784.2Ptp.5761.1.S1_atAt2g26710hypothetical protein-5e-29At1g77120ADH1 (ALCOHOL DEHYDROGENASE 1)O.I.H.G.S.X.
0.5078.6PtpAffx.202105.1.S1_s_atAt2g26710hypothetical protein-1e-3At3g60380-O.I.H.G.S.X.
0.5078.6Ptp.2081.1.A1_s_atAt2g26710hypothetical protein-6e-34At1g77120ADH1 (ALCOHOL DEHYDROGENASE 1)O.I.H.G.S.X.
0.2950.5PtpAffx.115945.1.S1_s_atAt2g26710hypothetical protein-5e-2At4g00355unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage