Co-expression analysis

Gene ID	GmaAffx.41904.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g04700: ferredoxin thioredoxin reductase catalytic beta chain family protein (HF=1e+0)
Module size	8 genes
NF	0.04
%ile	14.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	66.6	0.78	GmaAffx.41904.1.S1_at	BM525909	-	-	1e+0	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.84	Gma.11030.1.S1_at	BE190894	-	-	6e-2	At4g36770	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.85	Gma.9736.1.S1_at	CA936974	-	-	4e+0	Atcg01020	-	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.83	Gma.4084.1.S1_at	CD412016	-	-	6e-7	At4g14270	-	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.84	GmaAffx.83609.1.S1_at	BU926787	-	-	1e-12	At2g44910	ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.83	GmaAffx.93607.1.S1_s_at	CF809332	-	-	7e-5	At5g64260	EXL2 (EXORDIUM LIKE 2)	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.86	Gma.12996.1.A1_at	AW306798	-	-	3e-4	At3g09820	ADK1 (adenosine kinase 1)	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.81	GmaAffx.79139.1.S1_at	BM309694	-	-	3e-16	At1g73590	PIN1 (PIN-FORMED 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
25.1	99.8	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
21.6	99.8	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
11.5	99.4	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
10.7	99.4	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
8.7	99.1	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.3	98.2	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.0	98.0	GSM191077	Soybean_Cotyledon_SUS1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.9	97.1	GSM147936	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.2	96.0	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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