Co-expression analysis

Gene ID	GmaAffx.41724.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g48240: unknown protein (HF=3e+0)
Module size	10 genes
NF	0.07
%ile	21.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.38	53.3	0.85	GmaAffx.41724.1.S1_at	BI968713	-	-	3e+0	At5g48240	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.88	GmaAffx.25064.1.A1_at	CD416430	-	-	8e+0	At5g60553	-	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.91	GmaAffx.44314.1.S1_at	BE822507	-	-	2e-15	At4g31590	ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5)	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.90	Gma.8846.1.A1_at	BE658130	-	-	1e+0	At1g71080	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.90	GmaAffx.69182.1.S1_s_at	BM525748	-	-	1e+0	At5g01940	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.89	Gma.5666.2.S1_at	BE609637	-	-	5e-141	At1g75780	TUB1	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.89	Gma.6384.1.S1_at	BI968043	-	-	5e-51	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.89	Gma.10385.1.S1_a_at	CD415146	-	-	2e+0	At3g59000	F-box family protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.89	GmaAffx.51678.1.A1_at	BU546831	-	-	4e+0	At4g12380	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.89	Gma.17409.2.S1_at	BU081175	-	-	5e-2	At3g23175	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	98.0	GSM201120	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.0	98.0	GSM182039	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.8	97.9	GSM201121	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.7	97.8	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.5	97.7	GSM201115	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.5	97.7	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.4	97.6	GSM182046	Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.4	97.6	GSM147954	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.4	97.6	GSM182040	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.4	97.6	GSM147955	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.3	97.5	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.3	97.5	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.3	97.5	GSM147945	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.2	97.4	GSM184826	Young trifoliate leaf, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.2	97.4	GSM191083	Soybean_Cotyledon_EPD1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.2	97.4	GSM191084	Soybean_Cotyledon_EPD2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.2	97.4	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.2	97.4	GSM182045	Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.1	97.3	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.1	97.3	GSM201114	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.1	97.3	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.1	97.3	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.1	97.3	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.0	97.2	GSM201110	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.0	97.2	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.0	97.2	GSM182030	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.9	97.1	GSM147943	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.9	97.1	GSM184827	Young trifoliate leaf, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.9	97.1	GSM182047	Whole Seed at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.9	97.1	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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