| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
| 0.90 | 93.7 | 0.85 | GmaAffx.39875.1.S1_at | BE331706 | - | - | 1e-31 | At1g78955 | CAMS1 (Camelliol C synthase 1) | O.I. | H.G. | S.X. | |
| 0.70 | 87.1 | 0.91 | GmaAffx.77189.1.S1_at | BI787035 | - | - | 1e-31 | At1g54350 | ABC transporter family protein | O.I. | H.G. | S.X. | |
| 0.57 | 78.8 | 0.91 | Gma.15490.3.S1_s_at | BQ298020 | - | - | 2e-5 | At1g23730 | BCA3 (BETA CARBONIC ANHYDRASE 4) | O.I. | H.G. | S.X. | |
| 0.56 | 78.2 | 0.92 | Gma.16474.2.S1_at | BU090527 | - | - | 2e-45 | At5g09930 | ATGCN2 | O.I. | H.G. | S.X. | |
| 0.52 | 73.1 | 0.89 | GmaAffx.20397.1.A1_at | CD408414 | - | - | 1e-2 | At4g33470 | hda14 (histone deacetylase 14) | O.I. | H.G. | S.X. | |
| 0.52 | 73.1 | 0.90 | Gma.13050.1.S1_at | CD394853 | - | - | 3e-8 | At1g75460 | ATP-dependent protease La (LON) domain-containing protein | O.I. | H.G. | S.X. | |
| 0.51 | 72.3 | 0.91 | GmaAffx.60427.1.S1_at | BM271112 | - | - | 4e-9 | At1g73110 | ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative | O.I. | H.G. | S.X. | |
| 0.49 | 68.3 | 0.90 | GmaAffx.74040.1.S1_at | BG316398 | - | - | 3e-25 | At4g36530 | hydrolase, alpha/beta fold family protein | O.I. | H.G. | S.X. | |
| 0.49 | 68.3 | 0.90 | Gma.13330.1.S1_at | BM178198 | - | - | 1e-9 | At5g57040 | lactoylglutathione lyase family protein / glyoxalase I family protein | O.I. | H.G. | S.X. | |
| 0.46 | 65.5 | 0.93 | GmaAffx.86250.2.S1_at | BI471109 | - | - | 8e-1 | At3g13580 | 60S ribosomal protein L7 (RPL7D) | O.I. | H.G. | S.X. | |
| 0.44 | 63.3 | 0.92 | GmaAffx.23473.2.S1_at | BM525801 | - | - | 2e-10 | At3g27820 | MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4) | O.I. | H.G. | S.X. | |
| 0.44 | 63.3 | 0.91 | GmaAffx.83068.1.S1_at | BQ253795 | - | - | 4e+0 | At3g62510 | protein disulfide isomerase-related | O.I. | H.G. | S.X. | |
| 0.43 | 60.6 | 0.91 | GmaAffx.49364.1.S1_at | CA939072 | - | - | 8e-1 | At5g21960 | AP2 domain-containing transcription factor, putative | O.I. | H.G. | S.X. | |
| 0.43 | 60.6 | 0.90 | GmaAffx.76884.1.S1_at | AW620343 | - | - | 3e-1 | At2g28600 | ATP binding / ATP-dependent helicase/ nucleic acid binding | O.I. | H.G. | S.X. | |
| 0.40 | 57.1 | 0.93 | GmaAffx.24949.1.S1_at | AW459517 | - | - | 2e-49 | At3g24190 | ABC1 family protein | O.I. | H.G. | S.X. | |
| 0.39 | 54.5 | 0.90 | GmaAffx.84017.1.S1_at | BI943454 | - | - | 3e-29 | At5g13650 | elongation factor family protein | O.I. | H.G. | S.X. | |
| 0.37 | 51.7 | 0.91 | Gma.14800.2.S1_at | BE610029 | - | - | 3e-27 | At3g07670 | SET domain-containing protein | O.I. | H.G. | S.X. | |
| 0.36 | 50.8 | 0.90 | GmaAffx.76046.1.S1_at | AW761236 | - | - | 9e-11 | At1g43670 | fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative | O.I. | H.G. | S.X. | |
| 0.36 | 50.8 | 0.93 | Gma.13225.1.S1_at | CD392317 | - | - | 3e-8 | At5g65840 | - | O.I. | H.G. | S.X. | |
| 0.36 | 50.8 | 0.91 | Gma.10475.1.S1_at | BM731634 | - | - | 2e-15 | At3g17040 | HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107) | O.I. | H.G. | S.X. | |
| 0.35 | 48.6 | 0.93 | Gma.16336.1.S1_at | BE659555 | - | - | 1e-22 | At1g53670 | MSRB1 (methionine sulfoxide reductase B 1) | O.I. | H.G. | S.X. | |
| 0.35 | 48.6 | 0.93 | GmaAffx.29877.1.S1_at | BI972919 | - | - | 1e-3 | At1g05140 | membrane-associated zinc metalloprotease, putative | O.I. | H.G. | S.X. | |
| 0.33 | 46.1 | 0.92 | Gma.17535.1.S1_at | BM178659 | - | - | 3e-11 | At5g43850 | ARD4 | O.I. | H.G. | S.X. | |
| 0.33 | 46.1 | 0.92 | GmaAffx.73357.1.S1_at | BM893134 | - | - | 5e-24 | At5g08650 | GTP-binding protein LepA, putative | O.I. | H.G. | S.X. | |
| 0.32 | 43.7 | 0.93 | Gma.10458.3.S1_a_at | BM178487 | - | - | 6e+0 | At5g24640 | unknown protein | O.I. | H.G. | S.X. | |
| 0.30 | 40.4 | 0.89 | GmaAffx.87951.1.S1_at | AW760811 | - | - | 2e-8 | At3g27110 | peptidase M48 family protein | O.I. | H.G. | S.X. | |
| 0.29 | 39.0 | 0.89 | GmaAffx.85726.1.S1_at | AI496042 | - | - | 8e-1 | At5g02060 | integral membrane protein, putative | O.I. | H.G. | S.X. | |
| 0.29 | 39.0 | 0.89 | Gma.11134.1.A1_at | BG839068 | - | - | 6e-47 | At1g06690 | aldo/keto reductase family protein | O.I. | H.G. | S.X. | |
| 0.22 | 28.1 | 0.90 | GmaAffx.78036.2.S1_at | BI427469 | - | - | 1e-2 | At3g05760 | nucleic acid binding / zinc ion binding | O.I. | H.G. | S.X. | |
| 0.21 | 26.6 | 0.94 | Gma.6855.1.S1_at | CD414500 | - | - | 8e-37 | At2g25080 | ATGPX1 (GLUTATHIONE PEROXIDASE 1) | O.I. | H.G. | S.X. | |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
| 13.3 | 99.5 | GSM209581 | susceptible_48hours_rep1 | GSE8432 | Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi |  |
| 11.3 | 99.4 | GSM209582 | mock_0hours_rep2 | GSE8432 | Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi | |
| 10.2 | 99.3 | GSM209599 | susceptible_48hours_rep3 | GSE8432 | Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi | |
| 9.9 | 99.3 | GSM209580 | resistant_48hours_rep1 | GSE8432 | Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi | |
| 9.7 | 99.3 | GSM209590 | susceptible_48hours_rep2 | GSE8432 | Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi | |
| 9.5 | 99.2 | GSM209598 | resistant_48hours_rep3 | GSE8432 | Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi | |
| 9.0 | 99.2 | GSM245936 | Leaf_LCO treated_Rep 1_48 h After Treatment | GSE9730 | Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression. | |
| 9.0 | 99.2 | GSM245934 | Leaf_Water Control_Rep 2_48 h After Treatment | GSE9730 | Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression. | |
| 8.9 | 99.2 | GSM209591 | mock_0hours_rep3 | GSE8432 | Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi | |
| 8.8 | 99.1 | GSM170926 | Rust Innoculated, biological rep1 | GSE7108 | Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage | |
| 8.7 | 99.1 | GSM245937 | Leaf_LCO treated_Rep 2_48 h After Treatment | GSE9730 | Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression. | |
| 8.6 | 99.1 | GSM245935 | Leaf_Water Control_Rep 3_48 h After Treatment | GSE9730 | Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression. | |
| 8.5 | 99.1 | GSM245933 | Leaf_Water Control_Rep 1_48 h After Treatment | GSE9730 | Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression. | |
| 8.0 | 99.0 | GSM245938 | Leaf_LCO treated_Rep 3_48 h After Treatment | GSE9730 | Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression. | |
| 7.8 | 99.0 | GSM170924 | V2 Control, biological rep1 | GSE7108 | Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage | |
| 7.4 | 98.9 | GSM238041 | Soybean-Bayfield-4-RMA | GSE9374 | Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans | |
| 6.8 | 98.7 | GSM170927 | Rust Innoculated, biological rep2 | GSE7108 | Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage | |
| 6.5 | 98.7 | GSM209589 | resistant_48hours_rep2 | GSE8432 | Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi | |
| 6.5 | 98.7 | GSM170928 | V2 Control, biological rep3 | GSE7108 | Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage | |
| 6.4 | 98.6 | GSM238038 | Soybean-Bayfield-2-RMA | GSE9374 | Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans | |
| 6.3 | 98.6 | GSM209573 | mock_0hours_rep1 | GSE8432 | Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi | |
| 6.0 | 98.5 | GSM170925 | V2 Control, biological rep2 | GSE7108 | Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage | |
| 5.6 | 98.3 | GSM238060 | Soybean-S03W4-4-RMA | GSE9374 | Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans | |
| 5.5 | 98.3 | GSM238039 | Soybean-Bayfield-3-RMA | GSE9374 | Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans | |
| 5.5 | 98.3 | GSM238031 | Soybean-2601R-3-RMA | GSE9374 | Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans | |
| 5.2 | 98.1 | GSM238052 | Soybean-PS46R-1-RMA | GSE9374 | Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans | |
| 5.2 | 98.1 | GSM209597 | susceptible_24hours_rep3 | GSE8432 | Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi | |
| 5.0 | 98.0 | GSM238055 | Soybean-PS46R-4-RMA | GSE9374 | Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans | |
| 5.0 | 98.0 | GSM170929 | Rust Innoculated, biological rep3 | GSE7108 | Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage | |
| 4.9 | 98.0 | GSM209596 | resistant_24hours_rep3 | GSE8432 | Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi | |
