Co-expression analysis

Gene ID	GmaAffx.38753.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g13850: GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) (HF=4e-2)
Module size	26 genes
NF	0.09
%ile	26.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.80	GmaAffx.38753.1.S1_at	AI748583	-	-	4e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.92	GmaAffx.57598.1.S1_at	BF594939	-	-	7e-1	At1g05740	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.93	Gma.1674.2.S1_at	BU546187	-	-	3e+0	At1g36940	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.94	GmaAffx.17488.1.A1_at	BI967328	-	-	2e-1	At3g18590	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.91	Gma.3073.1.S1_at	BM307829	-	-	2e+0	At1g60870	MEE9 (maternal effect embryo arrest 9)	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.93	GmaAffx.24435.1.S1_at	BG651542	-	-	3e+0	At3g32905	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.93	GmaAffx.67847.1.S1_at	AW350800	-	-	1e+1	At5g52547	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.92	GmaAffx.24635.1.A1_at	CD418601	-	-	9e-23	At5g23880	CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.93	Gma.7134.1.S1_at	BU544268	-	-	1e-5	At5g61780	tudor domain-containing protein / nuclease family protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.93	GmaAffx.66263.1.S1_at	BE659679	-	-	4e-1	At5g16920	-	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.94	Gma.2138.1.S1_at	AB040543.1	nonclathrin coat protein zeta2-COP	-	3e-2	At4g08520	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.91	GmaAffx.88411.1.S1_at	CA820153	-	-	6e-1	At4g34770	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.94	Gma.13720.1.A1_at	CD404387	-	-	3e+0	At1g11980	RUB3 (UBIQUITIN-RELATED PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.95	GmaAffx.90040.1.A1_x_at	CF805864	-	-	2e-88	At1g04480	60S ribosomal protein L23 (RPL23A)	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.95	Gma.11500.1.S1_at	BE058294	-	-	2e+0	At3g51760	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.92	GmaAffx.93050.1.S1_at	CF808775	-	-	7e-2	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.94	Gma.9169.1.S1_at	BG650246	-	-	3e+0	At5g65480	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.93	Gma.12521.1.S1_at	CD392755	-	-	1e+0	At4g27030	small conjugating protein ligase	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.93	Gma.12774.1.A1_at	CD397408	-	-	7e-1	At3g08700	UBC12 (ubiquitin-conjugating enzyme 12)	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.95	GmaAffx.19097.1.S1_at	BM522846	-	-	2e-1	At5g55000	FIP2	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.90	Gma.1605.1.S1_x_at	BI425139	-	-	2e-162	At1g48900	signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.89	GmaAffx.92854.1.S1_at	CF808579	-	-	9e-14	At1g60730	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.95	GmaAffx.14509.1.S1_at	BM523469	-	-	3e+0	At3g16360	AHP4 (HPT PHOSPHOTRANSMITTER 4)	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.93	GmaAffx.13710.1.S1_at	BI095126	-	-	7e-1	At1g53935	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.93	Gma.10892.4.S1_s_at	CD403449	-	-	3e-101	At2g42740	RPL16A	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.92	GmaAffx.61061.1.S1_s_at	CA782177	-	-	1e+1	At5g27260	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	99.3	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
9.5	99.2	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.0	99.0	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.8	99.0	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.5	98.9	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.5	98.9	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.2	98.9	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.1	98.8	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.5	98.7	GSM201113	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.4	98.6	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.3	98.6	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.2	98.6	GSM201101	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.1	98.5	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.0	98.5	GSM201115	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.0	98.5	GSM201097	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.8	98.4	GSM201116	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.7	98.4	GSM201112	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.6	98.3	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.6	98.3	GSM201117	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.6	98.3	GSM201114	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.5	98.3	GSM201110	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.2	98.1	GSM201108	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.1	98.1	GSM201109	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.0	98.0	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.9	98.0	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.8	97.9	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.5	97.7	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.5	97.7	GSM191084	Soybean_Cotyledon_EPD2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.5	97.7	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.5	97.7	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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