Co-expression analysis

Gene ID	GmaAffx.3761.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g54980: integral membrane family protein (HF=7e+0)
Module size	6 genes
NF	0.06
%ile	20.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	GmaAffx.3761.1.S1_s_at	BF066161	-	-	7e+0	At5g54980	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.95	Gma.8007.1.S1_s_at	AI856444	-	-	2e-3	At5g16660	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.98	Gma.3535.1.S1_x_at	CD392670	-	-	2e+0	At5g24650	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.98	Gma.3535.2.S1_at	BG047223	-	-	2e+0	At2g21320	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.98	GmaAffx.73156.1.S1_at	BM523154	-	-	7e-8	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.98	Gma.17713.1.S1_at	BG156677	-	-	1e-63	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.8736.1.S1_at, orthologous to the query gene, GmaAffx.3761.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	PtpAffx.8736.1.S1_at	At5g54980	-	-	1e+0	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.212006.1.S1_at	At5g54980	-	-	1e-10	At5g48720	XRI1 (X-RAY INDUCED TRANSCRIPT 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.214757.1.S1_at	At5g54980	hypothetical protein	-	6e-1	At3g05625	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.214817.1.S1_at	At5g54980	hypothetical protein	-	1e-2	At5g53860	emb2737 (embryo defective 2737)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.42589.1.A1_at	At5g54980	hypothetical protein	-	8e-21	At5g25150	TAF5 (TBP-ASSOCIATED FACTOR 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.212325.1.S1_s_at	At5g54980	-	-	4e-1	At4g21560	VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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