Co-expression analysis

Gene ID GmaAffx.36250.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At5g62520: SRO5 (SIMILAR TO RCD ONE 5) (HF=2e-1)
Module size 6 genes
NF 0.49
%ile 80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4665.50.94GmaAffx.36250.1.S1_s_atBG551078--2e-1At5g62520SRO5 (SIMILAR TO RCD ONE 5)O.I.H.G.S.X.
0.5576.30.95GmaAffx.93046.1.S1_atCF808771--3e-1At5g62520SRO5 (SIMILAR TO RCD ONE 5)O.I.H.G.S.X.
0.5071.70.95GmaAffx.78968.2.S1_atBM188587--9e-13At5g39670calcium-binding EF hand family proteinO.I.H.G.S.X.
0.4665.50.95GmaAffx.85409.1.S1_atBF598665--2e-1At1g01490heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.4463.30.96Gma.17559.1.S1_atBG508388--1e+1At5g54130-O.I.H.G.S.X.
0.3142.20.96GmaAffx.59154.1.S1_atBG508624--7e+0At4g37685unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.997.1GSM29220870_C004.1A.R9A1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.496.4GSM29247371_C111.1G.R9G1U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29242023_1251.1G.R158U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29248784_1251.1G.R158L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29242225_1253.1G.R161U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29237044_1227.1F.R139U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29233985_1171.1E.R106U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.86715.1.S1_at, orthologous to the query gene, GmaAffx.36250.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2TaAffx.86715.1.S1_atAt5g62520--1e+0At1g31220phosphoribosylglycinamide formyltransferaseO.I.H.G.S.X.
0.2532.1Ta.24977.1.S1_x_atAt5g62520--5e-67At3g04120GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)O.I.H.G.S.X.
0.1415.8Ta.1342.1.S1_s_atAt5g62520--6e-9At2g23090unknown proteinO.I.H.G.S.X.
0.1415.8Ta.1409.1.S1_x_atAt5g62520vacuolar proton-inorganic pyrophosphatase-1e-102At1g15690AVP1O.I.H.G.S.X.
0.078.6Ta.1198.1.S1_atAt5g62520--1e-8At5g59890ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)O.I.H.G.S.X.
0.045.8Ta.5857.1.S1_a_atAt5g62520--8e-1At2g17730zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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