Co-expression analysis

Gene ID	GmaAffx.36250.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g62520: SRO5 (SIMILAR TO RCD ONE 5) (HF=2e-1)
Module size	6 genes
NF	0.49
%ile	80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	65.5	0.94	GmaAffx.36250.1.S1_s_at	BG551078	-	-	2e-1	At5g62520	SRO5 (SIMILAR TO RCD ONE 5)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.95	GmaAffx.93046.1.S1_at	CF808771	-	-	3e-1	At5g62520	SRO5 (SIMILAR TO RCD ONE 5)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.95	GmaAffx.78968.2.S1_at	BM188587	-	-	9e-13	At5g39670	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.95	GmaAffx.85409.1.S1_at	BF598665	-	-	2e-1	At1g01490	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.96	Gma.17559.1.S1_at	BG508388	-	-	1e+1	At5g54130	-	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.96	GmaAffx.59154.1.S1_at	BG508624	-	-	7e+0	At4g37685	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	97.1	GSM292208	70_C004.1A.R9A1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292473	71_C111.1G.R9G1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292420	23_1251.1G.R158U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292487	84_1251.1G.R158L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292422	25_1253.1G.R161U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292370	44_1227.1F.R139U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292339	85_1171.1E.R106U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, HU08A18u_at, orthologous to the query gene, GmaAffx.36250.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.1	HU08A18u_at	At5g62520	-	-	4e+0	At5g46560	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	HW09E23u_at	At5g62520	-	-	4e+0	At2g20690	lumazine-binding family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig10603_at	At5g62520	-	-	4e+0	At5g66170	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig17529_at	At5g62520	-	-	3e-2	At1g72125	transporter	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig11931_at	At5g62520	-	-	1e+0	At5g21910	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig19410_at	At5g62520	-	-	1e+1	At5g49420	MADS-box protein (AGL84)	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig8964_at	At5g62520	-	-	2e-2	At1g04778	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig18530_s_at	At5g62520	-	-	5e+0	At5g46620	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig25424_at	At5g62520	-	-	5e+0	At5g64750	ABR1 (ABA REPRESSOR1)	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig8593_s_at	At5g62520	-	-	2e+0	At3g17090	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig8835_at	At5g62520	-	-	1e-7	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig7287_at	At5g62520	-	-	6e-5	At2g24850	TAT3 (TYROSINE AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.08	6.5	Contig4710_at	At5g62520	-	-	3e-1	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	O.I.	H.G.	S.X.	Please select
0.08	6.5	Contig4707_x_at	At5g62520	-	-	5e+0	At2g35900	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	HU14O09u_at	At5g62520	-	-	5e+0	At1g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig4156_s_at	At5g62520	-	-	2e-39	At1g10730	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig3569_at	At5g62520	-	-	7e-18	At1g69620	RPL34 (RIBOSOMAL PROTEIN L34)	O.I.	H.G.	S.X.	Please select
0.05	4.1	rbaal35o19_s_at	At5g62520	-	-	4e+0	At5g58560	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	Contig7324_s_at	At5g62520	-	-	1e-36	At4g26570	ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.03	2.6	Contig21112_at	At5g62520	-	-	6e+0	At5g23360	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.02	1.8	Contig8615_at	At5g62520	-	-	2e+0	At5g24870	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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