Co-expression analysis

Gene ID	GmaAffx.34975.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g25460: unknown protein (HF=5e-8)
Module size	26 genes
NF	0.40
%ile	70.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.1	0.49	GmaAffx.34975.1.S1_at	BU547817	-	-	5e-8	At5g25460	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.59	Gma.4628.2.S1_at	AW472384	-	-	1e-1	At1g66540	cytochrome P450, putative	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.80	GmaAffx.79733.1.S1_s_at	AI748104	Kunitz trypsin inhibitor /// trypsin inhibitor subtype A /// trypsin inhibitor subtype B	-	1e+1	At5g58070	TIL (TEMPERATURE-INDUCED LIPOCALIN)	O.I.	H.G.	S.X.	Please select
0.68	86.4	0.85	GmaAffx.36259.1.S1_s_at	BG649950	-	-	9e+0	At5g38920	nucleic acid binding / ribonuclease H	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.83	Gma.226.1.S1_s_at	X60772.1	24 kDa oleosin isoform	-	4e-1	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.76	GmaAffx.295.1.A1_s_at	BG653267	lipoxygenase-3	-	3e-1	At4g34790	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.76	Gma.436.1.S1_at	CD398858	hypothetical LOC547938	-	3e-1	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.76	GmaAffx.54955.1.S1_at	BI786528	dehydrin	-	3e-10	At5g12210	geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.76	Gma.188.1.S1_at	D17396.1	albumin 1	-	3e-1	At1g72600	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.81	Gma.12064.1.S1_at	BG653777	-	-	1e-10	At5g25900	GA3 (GA REQUIRING 3)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.87	GmaAffx.81233.1.A1_at	BE823605	-	-	3e+0	At5g58650	PSY1 (plant peptide containing sulfated tyrosine 1)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.80	Gma.1880.1.A1_x_at	BE658245	-	-	3e+0	At5g43185	Expressed protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.85	Gma.1833.1.S1_at	BE823692	-	-	1e+0	At1g24240	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.80	GmaAffx.75778.1.S1_at	BM270359	-	-	9e-2	At5g07550	GRP19 (GLYCINE-RICH PROTEIN 19)	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.75	Gma.17364.1.S1_at	CA803078	24 kDa oleosin isoform	-	6e-1	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.79	Gma.9.1.S1_at	AF004807.1	dehydrin	-	1e-7	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.71	GmaAffx.58559.1.A1_at	BE823100	-	-	2e-1	At4g15770	RNA binding / protein binding	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.80	Gma.2912.1.S1_s_at	AF117884.1	seed maturation protein PM30	-	1e+0	At4g39460	SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.75	Gma.17355.1.A1_at	AW596900	-	-	3e+0	At1g06500	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.83	Gma.2253.1.S1_at	AF169018.1	seed maturation protein PM34	-	5e-26	At1g54870	binding / catalytic/ oxidoreductase	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.84	Gma.2286.1.S1_at	BI094996	bZIP transcription factor bZIP132	-	5e+0	At2g35585	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.72	Gma.13755.1.A1_at	CD405220	-	-	3e-3	At3g29260	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.73	GmaAffx.60969.1.S1_at	BU763951	-	-	5e-1	At5g39810	AGL98 (AGAMOUS-LIKE 98)	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.68	Gma.1898.1.S1_at	M20733.1	Bowman-Birk proteinase isoinhibitor D-II /// protease inhibitor IV	-	2e-2	At2g43430	GLX2-1 (GLYOXALASE 2-1)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.66	GmaAffx.57176.1.S1_at	AW101124	-	-	2e+1	At4g19035	LCR7 (Low-molecular-weight cysteine-rich 7)	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.60	Gma.947.1.S1_at	BI095073	lipoxygenase	-	4e-4	At1g55020	LOX1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.9	99.5	GSM201101	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
12.9	99.5	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
11.7	99.4	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
11.2	99.4	GSM201097	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.5	99.1	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.2	99.0	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
8.2	99.0	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.0	99.0	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
7.8	99.0	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
7.8	99.0	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
7.7	99.0	GSM201113	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.7	99.0	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
7.4	98.9	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.3	98.9	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
7.3	98.9	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
7.2	98.9	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.1	98.8	GSM201110	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.1	98.8	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
7.1	98.8	GSM201109	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.0	98.8	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.0	98.8	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.0	98.8	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.9	98.8	GSM201112	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.9	98.8	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
6.6	98.7	GSM309346	transgenic RNAiOleosin, biol rep 2, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
6.6	98.7	GSM309345	transgenic RNAiOleosin, biol rep 2, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
6.6	98.7	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
6.5	98.7	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.5	98.7	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.4	98.6	GSM201114	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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