Co-expression analysis

Gene ID	GmaAffx.33627.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g50550: unknown protein (HF=3e-3)
Module size	27 genes
NF	0.16
%ile	37.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.82	GmaAffx.33627.1.S1_at	BU926573	-	-	3e-3	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.86	GmaAffx.28763.1.S1_at	BQ630517	-	-	2e-1	At1g62040	ATG8C (autophagy 8c)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.88	GmaAffx.72279.2.A1_at	BU549417	-	-	4e+0	At5g47310	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.93	GmaAffx.567.1.S1_at	BE440401	-	-	4e-1	At4g12320	CYP706A6	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.90	GmaAffx.92214.1.S1_s_at	CF807939	-	-	1e-30	At1g10200	WLIM1	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.94	GmaAffx.16168.1.A1_at	CD408636	-	-	4e+0	At3g49130	RNA binding	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.93	Gma.12424.1.S1_s_at	AW706222	-	-	3e-2	At3g27010	AT-TCP20	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.95	GmaAffx.69540.1.S1_at	BQ473403	-	-	2e-10	At3g49690	MYB84 (MYB DOMAIN PROTEIN 84)	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.91	GmaAffx.85429.1.S1_at	BI320453	-	-	2e+0	At1g59530	ATBZIP4 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 4)	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.91	GmaAffx.74781.1.S1_at	BE658510	-	-	4e-28	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.95	GmaAffx.30888.1.S1_at	BM525537	-	-	4e+0	At4g12440	adenine phosphoribosyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.94	Gma.4752.2.S1_at	BG154893	-	-	1e-28	At4g31720	TAFII15 (TBP-ASSOCIATED FACTOR II 15)	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.92	Gma.5799.2.S1_at	BM523744	-	-	3e+0	At5g13880	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.95	GmaAffx.87072.1.S1_at	BI784972	-	-	2e-9	At3g28970	AAR3 (antiauxin-resistant 3)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.92	GmaAffx.27577.1.S1_at	BI424688	-	-	9e-1	At5g01740	-	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.92	GmaAffx.12289.1.A1_at	BU546593	-	-	3e-1	At5g27310	-	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.93	GmaAffx.84977.1.S1_at	BQ611240	-	-	3e-2	At4g25890	60S acidic ribosomal protein P3 (RPP3A)	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.94	GmaAffx.69666.1.S1_at	BQ742009	-	-	1e-9	At5g10200	binding	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.93	GmaAffx.25653.1.A1_at	AW350967	-	-	1e-1	At2g45680	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.93	GmaAffx.92773.1.S1_at	CF808498	-	-	4e-34	At4g31720	TAFII15 (TBP-ASSOCIATED FACTOR II 15)	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.94	GmaAffx.87791.1.S1_at	BQ740530	-	-	2e+0	At3g48185	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.93	GmaAffx.80196.1.A1_at	AW350623	-	-	3e+0	At3g22460	OASA2 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.94	Gma.7389.1.S1_at	BE821312	-	-	1e-3	At1g14690	MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.95	Gma.7551.1.A1_at	BG650203	-	-	4e+0	At5g09210	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.93	Gma.12497.1.S1_x_at	CD395205	-	-	2e-5	At4g24210	SLY1 (SLEEPY1)	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.94	GmaAffx.45074.1.S1_at	BM526372	-	-	3e-11	At2g39130	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.94	GmaAffx.337.1.A1_at	BE823721	-	-	1e+0	At1g23480	ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	97.3	GSM294218	69_3140.2H.R9H3P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM294607	74_2540.2L.R156P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294244	92_2340.2H.R202P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294206	58_2338.2H.R240P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292969	47_C222.1M.R9M1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294293	45_3162.2I.R9I3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294571	41_3212.2L.R9L3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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