Co-expression analysis

Gene ID	GmaAffx.33620.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g51730: RWD domain-containing protein (HF=7e-8)
Module size	30 genes
NF	0.38
%ile	66.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.9	0.97	GmaAffx.33620.1.A1_at	BE819849	-	-	7e-8	At1g51730	RWD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	Gma.8059.1.S1_at	AW310669	-	-	2e+0	At4g40050	signal transducer	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.98	Gma.5793.9.S1_at	AI443550	-	-	3e-3	At3g10220	tubulin folding cofactor B	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.98	GmaAffx.54208.1.S1_at	BE824212	-	-	5e-2	At4g13600	-	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	Gma.13802.1.S1_at	CD403134	-	-	2e+0	At1g27695	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	Gma.5567.1.S1_at	BM093246	-	-	5e-5	At5g45360	F-box family protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.98	GmaAffx.661.1.S1_at	BI969786	-	-	2e+0	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.8673.1.S1_at	BE821944	-	-	3e-114	At1g51720	glutamate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.8550.1.S1_a_at	BM092281	-	-	1e-160	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	GmaAffx.66034.1.S1_at	AW351123	-	-	3e-4	At5g11030	ALF4 (ABERRANT LATERAL ROOT FORMATION 4)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.98	GmaAffx.90031.1.S1_s_at	CF805756	-	-	8e-1	At1g33810	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.98	Gma.11121.2.S1_x_at	BM519870	-	-	1e-5	At1g11650	RNA-binding protein 45 (RBP45), putative	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.12593.1.S1_a_at	BE823660	-	-	6e-9	At2g32170	-	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	Gma.8652.1.A1_at	CD407809	-	-	3e-1	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	Gma.7581.1.S1_at	BI969748	-	-	1e-2	At5g13300	SFC (SCARFACE)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.13242.1.S1_at	CD396483	NAC domain protein	-	1e-5	At5g64060	anac103 (Arabidopsis NAC domain containing protein 103)	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.1806.1.S1_at	BI971557	-	-	5e-26	At2g23980	ATCNGC6	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.98	Gma.5692.1.S1_at	BM522647	-	-	3e-5	At5g48640	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	Gma.8167.1.S1_at	BI945308	-	-	5e+0	At4g17160	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	Gma.1034.2.S1_a_at	CD390455	-	-	1e-11	At4g02430	pre-mRNA splicing factor, putative / SR1 protein, putative	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	Gma.2238.1.S1_at	BM893125	-	-	4e-76	At3g55620	emb1624 (embryo defective 1624)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.17523.1.S1_s_at	CD399565	-	-	8e-24	At5g51940	NRPB6A	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.5582.1.S1_at	AW598007	-	-	2e-4	At4g32050	neurochondrin family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	GmaAffx.22333.1.S1_at	BI784750	-	-	1e-3	At3g12940	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.3754.1.S1_x_at	BI426229	-	-	9e-2	At3g18430	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.3757.1.S1_at	CD405183	-	-	6e-53	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	Gma.11201.3.S1_s_at	BG239638	-	-	5e-12	At4g36760	ATAPP1	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	Gma.6579.1.S1_at	BU763449	-	-	3e-34	At3g04830	binding	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	Gma.8135.1.S1_at	BE658039	GT-1	-	3e-36	At1g13450	DNA binding protein GT-1	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.98	Gma.16354.2.S1_s_at	CD393041	-	-	3e-8	At3g18165	MOS4 (Modifier of snc1,4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	96.0	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage