Co-expression analysis

Gene ID	GmaAffx.31898.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g23895: pleckstrin homology (PH) domain-containing protein-related (HF=6e-1)
Module size	16 genes
NF	0.28
%ile	53.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.2	0.96	GmaAffx.31898.1.S1_at	AW100638	-	-	6e-1	At4g23895	pleckstrin homology (PH) domain-containing protein-related	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	GmaAffx.34472.1.S1_at	AW432401	-	-	3e+0	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	Gma.6088.1.S1_at	BE822132	-	-	4e+0	At5g07100	WRKY26	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.97	GmaAffx.27321.1.S1_s_at	BG551437	-	-	5e-1	At3g06420	ATG8H (autophagy 8h)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.97	Gma.3728.2.S1_at	AW507696	-	-	6e-1	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.97	Gma.7810.1.S1_at	BG237707	-	-	7e-12	At5g20165	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.98	Gma.933.1.S1_at	CD401061	-	-	1e-25	At5g54750	transport protein particle (TRAPP) component Bet3, putative	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.97	Gma.2243.2.S1_s_at	BE807162	-	-	1e-23	At1g75510	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.8959.1.A1_at	BU765891	-	-	1e-1	At1g16810	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.98	Gma.9722.1.S1_at	BE823732	-	-	5e-4	At1g05720	selenoprotein family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	Gma.3109.1.A1_at	CD408055	-	-	3e+0	At2g46090	diacylglycerol kinase family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	Gma.16382.1.S1_at	AW317554	-	-	2e-61	At2g20930	-	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.98	GmaAffx.75093.1.A1_s_at	CD407666	-	-	1e+1	At5g65640	bHLH093 (beta HLH protein 93)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	Gma.2835.1.S1_at	BI969866	-	-	4e-40	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.97	Gma.18085.1.S1_at	BI971003	-	-	5e-110	At3g26618	ERF1-3 (eukaryotic release factor 1-3)	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.98	Gma.4379.1.S1_a_at	CD393195	-	-	1e-23	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	98.3	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.4	98.2	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.9	98.0	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.8	97.9	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.7	97.8	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.5	97.7	GSM191092	Soybean_Cotyledon_SEED2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.3	97.5	GSM191091	Soybean_Cotyledon_SEED1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.1	97.3	GSM182047	Whole Seed at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.1	97.3	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.1	97.3	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.0	97.2	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.0	97.2	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.9	97.1	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.9	97.1	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.9	97.1	GSM191081	Soybean_Cotyledon_EN1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.9	97.1	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.6	96.7	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.6	96.7	GSM184828	Whole Seed at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.6	96.7	GSM184829	Whole Seed at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.6	96.7	GSM182048	Whole Seed at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.5	96.6	GSM182030	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.5	96.6	GSM201127	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.5	96.6	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM201119	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM201115	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM201129	Whole Seed at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM147952	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.3	96.2	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.3	96.2	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.3	96.2	GSM191082	Soybean_Cotyledon_EN2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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