Co-expression analysis

Gene ID	GmaAffx.30344.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g01180: ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1) (HF=5e-6)
Module size	11 genes
NF	0.36
%ile	64.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.51	72.3	0.96	GmaAffx.30344.1.S1_at	AW349341	-	-	5e-6	At2g01180	ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	Gma.11341.1.S1_at	BG652352	-	-	2e-7	At1g32700	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	GmaAffx.92861.1.S1_s_at	CF808586	-	-	8e-2	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.97	Gma.11341.3.S1_s_at	BM177332	-	-	8e-26	At4g17900	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	GmaAffx.24666.1.S1_at	CA783210	-	-	2e-1	At2g39705	RTFL8 (ROTUNDIFOLIA LIKE 8)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.97	GmaAffx.58176.1.S1_at	BU577254	-	-	3e-1	At2g39540	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.97	Gma.46.1.S1_at	L28005.1	bZIP transcription factor bZIP52 /// transcription factor bZIP76	-	4e-6	At5g10030	TGA4 (TGACG MOTIF-BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.97	Gma.593.1.S1_x_at	AW351331	MYB transcription factor MYB176	-	1e-11	At1g74840	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	GmaAffx.65140.1.S1_at	BI700031	-	-	7e-2	At4g33670	L-galactose dehydrogenase (L-GalDH)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.97	Gma.13263.1.A1_at	CD394450	-	-	5e-1	At2g25190	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	GmaAffx.18686.1.S1_at	BU548864	-	-	5e-20	At1g31120	KUP10	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.8204.1.A1_at, orthologous to the query gene, GmaAffx.30344.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	Zm.8204.1.A1_at	At2g01180	hypothetical protein LOC100193193	-	5e-5	At3g02600	LPP3 (LIPID PHOSPHATE PHOSPHATASE 3)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.3079.1.A1_at	At2g01180	-	-	5e-1	At1g37007	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.18984.1.A1_at	At2g01180	hypothetical protein LOC100279220	-	2e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.18470.1.A1_at	At2g01180	hypothetical protein LOC100279437	-	7e+0	At5g26848	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.15439.1.A1_at	At2g01180	-	-	3e-3	At2g31820	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	Zm.10896.1.A1_at	At2g01180	-	-	2e-1	At2g23920	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.11831.1.S1_a_at	At2g01180	glucan endo-1,3-beta-glucosidase 6	-	7e-5	At5g58090	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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