Co-expression analysis

Gene ID GmaAffx.29942.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At2g04870: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.10
%ile 28.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5678.20.97GmaAffx.29942.1.S1_atAW567850--1e+0At2g04870unknown proteinO.I.H.G.S.X.
0.5071.70.96GmaAffx.62630.1.S1_atBE329740--9e-1At5g23035-O.I.H.G.S.X.
0.1518.70.97GmaAffx.71735.1.S1_atBI973751--4e-7At2g45240MAP1A (METHIONINE AMINOPEPTIDASE 1A)O.I.H.G.S.X.
0.0811.00.96Gma.1143.1.A1_atAW278604--4e-6At2g16860GCIP-interacting family proteinO.I.H.G.S.X.
0.0811.00.97GmaAffx.18005.1.S1_atBU765846--2e-13At4g27630GTG2 (GPCR-TYPE G PROTEIN 2)O.I.H.G.S.X.
0.047.00.96GmaAffx.45437.1.S1_atAI960629biotin synthase-7e-21At2g43360BIO2 (BIOTIN AUXOTROPH 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.296.0GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29443085_2455.2J.R220U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1616838_at, orthologous to the query gene, GmaAffx.29942.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8795.21616838_atAt2g04870--3e-1At1g12180-O.I.H.G.S.X.
0.4361.51621419_atAt2g04870similar to Os09g0515500-4e+0At3g53370DNA-binding S1FA family proteinO.I.H.G.S.X.
0.4260.11611430_atAt2g04870--4e+0At3g52790peptidoglycan-binding LysM domain-containing proteinO.I.H.G.S.X.
0.4158.71620211_atAt2g04870hypothetical protein LOC100261483-1e+0At3g07565DNA bindingO.I.H.G.S.X.
0.3548.51616843_atAt2g04870hypothetical protein LOC100252068-7e-17At4g18460D-Tyr-tRNA(Tyr) deacylase family proteinO.I.H.G.S.X.
0.3446.81619591_atAt2g04870hypothetical protein LOC100265473-5e-36At5g16620TIC40O.I.H.G.S.X.
0.3345.71611574_atAt2g04870hypothetical protein LOC100243229-1e-23At4g30620unknown proteinO.I.H.G.S.X.
0.3345.71609245_atAt2g04870hypothetical protein LOC100249819-1e-6At4g29430rps15ae (ribosomal protein S15A E)O.I.H.G.S.X.
0.3345.71608179_atAt2g04870hypothetical protein LOC100260954-1e+0At5g26700germin-like protein, putativeO.I.H.G.S.X.
0.3141.31615943_atAt2g04870hypothetical protein LOC100266273-5e-14At1g51980mitochondrial processing peptidase alpha subunit, putativeO.I.H.G.S.X.
0.2937.71617318_atAt2g04870hypothetical protein LOC100258316-4e-12At5g23300PYRD (pyrimidine d)O.I.H.G.S.X.
0.2937.71621037_atAt2g04870--5e+0At5g18690AGP25 (ARABINOGALACTAN PROTEINS 25)O.I.H.G.S.X.
0.2837.71609080_atAt2g04870hypothetical protein LOC100265018-9e-21At5g54440unknown proteinO.I.H.G.S.X.
0.2837.71608879_s_atAt2g04870hypothetical protein LOC100265837-2e-1At2g20920unknown proteinO.I.H.G.S.X.
0.2837.71620282_atAt2g04870hypothetical protein LOC100243325-5e+0At5g13440ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.
0.2632.01620873_atAt2g04870hypothetical protein LOC100247687-1e-15At2g37660binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.2632.01610984_atAt2g04870hypothetical protein LOC100259256-1e+0At1g14200zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2530.51608770_atAt2g04870--6e-21At3g60620phosphatidate cytidylyltransferase family proteinO.I.H.G.S.X.
0.2530.51608170_atAt2g04870hypothetical protein LOC100248761-2e-24At1g04850ubiquitin-associated (UBA)/TS-N domain-containing proteinO.I.H.G.S.X.
0.2530.51606787_atAt2g04870hypothetical protein LOC100258674-4e-1At1g13620unknown proteinO.I.H.G.S.X.
0.2428.71622240_x_atAt2g04870--7e+0At5g37580-O.I.H.G.S.X.
0.2428.71619028_atAt2g04870hypothetical protein LOC100248919-3e-26At3g60620phosphatidate cytidylyltransferase family proteinO.I.H.G.S.X.
0.2124.01608735_atAt2g04870--3e+0At5g41960unknown proteinO.I.H.G.S.X.
0.2124.01607721_atAt2g04870hypothetical protein LOC100254814-5e-32At1g63000NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE)O.I.H.G.S.X.
0.2022.41622610_atAt2g04870hypothetical protein LOC100264665-5e-6At5g15090VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)O.I.H.G.S.X.
0.1718.21607335_atAt2g04870hypothetical protein LOC100245908-1e-20At3g06050PRXIIF (PEROXIREDOXIN IIF)O.I.H.G.S.X.
0.1616.71622059_atAt2g04870malate dehydrogenase-3e-40At3g15020malate dehydrogenase (NAD), mitochondrial, putativeO.I.H.G.S.X.
0.1616.71621926_atAt2g04870--1e+0At4g25310oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.1515.61618964_atAt2g04870hypothetical protein LOC100266690-1e-12At3g03100NADH:ubiquinone oxidoreductase family proteinO.I.H.G.S.X.
0.1414.41611098_atAt2g04870--1e-3At5g51180unknown proteinO.I.H.G.S.X.
0.1010.31616726_atAt2g04870hypothetical protein LOC100255605-8e-11At2g15290TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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