Co-expression analysis

Gene ID	GmaAffx.29942.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g04870: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.10
%ile	28.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.2	0.97	GmaAffx.29942.1.S1_at	AW567850	-	-	1e+0	At2g04870	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.96	GmaAffx.62630.1.S1_at	BE329740	-	-	9e-1	At5g23035	-	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.97	GmaAffx.71735.1.S1_at	BI973751	-	-	4e-7	At2g45240	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.96	Gma.1143.1.A1_at	AW278604	-	-	4e-6	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.97	GmaAffx.18005.1.S1_at	BU765846	-	-	2e-13	At4g27630	GTG2 (GPCR-TYPE G PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.96	GmaAffx.45437.1.S1_at	AI960629	biotin synthase	-	7e-21	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	96.0	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294430	85_2455.2J.R220U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, Contig21929_at, orthologous to the query gene, GmaAffx.29942.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	86.0	Contig21929_at	At2g04870	-	-	3e-1	At3g57040	ARR9 (RESPONSE REGULATOR 9)	O.I.	H.G.	S.X.	Please select
0.54	70.3	HU08B18u_at	At2g04870	-	-	1e+0	Atmg00690	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig17733_at	At2g04870	-	-	4e-1	At3g02750	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig4560_at	At2g04870	-	-	2e-1	At1g29000	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig18942_at	At2g04870	-	-	5e-1	At2g18530	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig8930_s_at	At2g04870	-	-	7e-1	At1g30040	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig9311_at	At2g04870	-	-	5e+0	At5g01880	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig10949_at	At2g04870	-	-	4e-6	At1g65730	YSL7 (YELLOW STRIPE LIKE 7)	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig15180_at	At2g04870	-	-	2e-1	At1g57690	F-box family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig7254_at	At2g04870	-	-	6e+0	At2g17880	DNAJ heat shock protein, putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig8480_at	At2g04870	-	-	1e-21	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig1695_at	At2g04870	-	-	7e-21	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig5426_at	At2g04870	-	-	1e-1	At3g47160	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig5428_s_at	At2g04870	-	-	2e-9	At2g20900	diacylglycerol kinase, putative	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig16906_at	At2g04870	-	-	9e-5	At5g04710	aspartyl aminopeptidase, putative	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig1298_at	At2g04870	-	-	6e-51	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig26520_at	At2g04870	-	-	5e+0	At5g26610	D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig24465_at	At2g04870	-	-	3e+0	At5g42700	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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