CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.29942.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g04870: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.10

%ile 28.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 78.2 0.97 GmaAffx.29942.1.S1_at AW567850 - - 1e+0 At2g04870 unknown protein O.I. H.G. S.X.
0.50 71.7 0.96 GmaAffx.62630.1.S1_at BE329740 - - 9e-1 At5g23035 - O.I. H.G. S.X.
0.15 18.7 0.97 GmaAffx.71735.1.S1_at BI973751 - - 4e-7 At2g45240 MAP1A (METHIONINE AMINOPEPTIDASE 1A) O.I. H.G. S.X.
0.08 11.0 0.96 Gma.1143.1.A1_at AW278604 - - 4e-6 At2g16860 GCIP-interacting family protein O.I. H.G. S.X.
0.08 11.0 0.97 GmaAffx.18005.1.S1_at BU765846 - - 2e-13 At4g27630 GTG2 (GPCR-TYPE G PROTEIN 2) O.I. H.G. S.X.
0.04 7.0 0.96 GmaAffx.45437.1.S1_at AI960629 biotin synthase - 7e-21 At2g43360 BIO2 (BIOTIN AUXOTROPH 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 96.0 GSM292838 18_C211.1L.SLL3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM294430 85_2455.2J.R220U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g04870, orthologous to the query gene, GmaAffx.29942.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g04870 815034 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. H.G. S.X.
0.82 90.9 At5g35290 833483 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. H.G. S.X.
0.80 89.8 At3g43150 823381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.78 88.6 At3g50320 824194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.77 88.0 At5g27190 3770742 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.76 87.4 At1g35614 840459 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.75 86.9 At1g44990 841064 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system O.I. H.G. S.X.
0.69 82.9 At4g08890 3769919 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.64 78.9 At5g27340 832792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. H.G. S.X.
0.40 50.8 At5g35010 833446 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.35 41.6 At1g41770 840783 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage