Co-expression analysis

Gene ID	GmaAffx.29692.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g24260: SEP3 (SEPALLATA3) (HF=8e-1)
Module size	10 genes
NF	0.06
%ile	20.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.8	0.92	GmaAffx.29692.2.S1_at	AI437572	-	-	8e-1	At1g24260	SEP3 (SEPALLATA3)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.93	GmaAffx.29692.1.S1_at	AW348396	-	-	3e+0	At4g01700	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.97	GmaAffx.58144.1.S1_at	AW349047	-	-	1e+0	At4g39900	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.96	GmaAffx.91563.1.S1_at	CF807288	-	-	1e+0	At3g02493	RTFL19 (ROTUNDIFOLIA LIKE 19)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.99	GmaAffx.60654.1.S1_s_at	BI316139	-	-	2e-9	At1g55850	ATCSLE1	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.96	GmaAffx.89795.1.S1_s_at	CK606628	-	-	5e+0	At4g26466	LRE (LORELEI)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.96	GmaAffx.85114.1.S1_s_at	AW760844	-	-	3e+0	At4g26466	LRE (LORELEI)	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.96	GmaAffx.86175.2.S1_at	BI471498	-	-	2e-2	At1g09490	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.94	GmaAffx.59462.1.S1_s_at	BI469429	-	-	2e-1	At4g12530	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.94	GmaAffx.90168.1.S1_at	CF805893	-	-	5e-3	At2g36760	UGT73C2 (UDP-glucosyl transferase 73C2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os06g0726100, orthologous to the query gene, GmaAffx.29692.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	55.4	Os06g0726100	At1g24260	-	Endochitinase precursor (EC 3.2.1.14)	1e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os06g0726200	At1g24260	-	Endochitinase precursor (EC 3.2.1.14)	2e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os11g0213000	At1g24260	-	Protein kinase domain containing protein	6e+0	At5g45760	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.32	36.3	Os10g0322200	At1g24260	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	6e-2	At1g22400	UGT85A1	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	12.6	Os01g0187200	At1g24260	-	Hypothetical protein	5e-2	At5g19875	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	9.3	Os01g0940800	At1g24260	-	Beta-1,3-glucanase precursor	1e-5	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	8.2	Os01g0609300	At1g24260	-	PDR-like ABC transporter (PDR3 ABC transporter)	6e-1	At3g18590	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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