Co-expression analysis

Gene ID	GmaAffx.29692.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g24260: SEP3 (SEPALLATA3) (HF=8e-1)
Module size	10 genes
NF	0.06
%ile	20.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.8	0.92	GmaAffx.29692.2.S1_at	AI437572	-	-	8e-1	At1g24260	SEP3 (SEPALLATA3)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.93	GmaAffx.29692.1.S1_at	AW348396	-	-	3e+0	At4g01700	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.97	GmaAffx.58144.1.S1_at	AW349047	-	-	1e+0	At4g39900	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.96	GmaAffx.91563.1.S1_at	CF807288	-	-	1e+0	At3g02493	RTFL19 (ROTUNDIFOLIA LIKE 19)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.99	GmaAffx.60654.1.S1_s_at	BI316139	-	-	2e-9	At1g55850	ATCSLE1	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.96	GmaAffx.89795.1.S1_s_at	CK606628	-	-	5e+0	At4g26466	LRE (LORELEI)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.96	GmaAffx.85114.1.S1_s_at	AW760844	-	-	3e+0	At4g26466	LRE (LORELEI)	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.96	GmaAffx.86175.2.S1_at	BI471498	-	-	2e-2	At1g09490	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.94	GmaAffx.59462.1.S1_s_at	BI469429	-	-	2e-1	At4g12530	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.94	GmaAffx.90168.1.S1_at	CF805893	-	-	5e-3	At2g36760	UGT73C2 (UDP-glucosyl transferase 73C2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig3576_at, orthologous to the query gene, GmaAffx.29692.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig3576_at	At1g24260	-	-	1e-8	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig4674_at	At1g24260	-	-	5e-2	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig18939_at	At1g24260	-	-	3e-2	At4g35700	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	rbaal33b21_s_at	At1g24260	-	-	7e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig5523_at	At1g24260	-	-	4e-8	At5g10480	PAS2 (PASTICCINO 2)	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig18407_at	At1g24260	-	-	2e+0	At3g50450	HR1 (HOMOLOG OF RPW8 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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