Co-expression analysis

Gene ID GmaAffx.29692.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g24260: SEP3 (SEPALLATA3) (HF=8e-1)
Module size 10 genes
NF 0.06
%ile 20.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6986.80.92GmaAffx.29692.2.S1_atAI437572--8e-1At1g24260SEP3 (SEPALLATA3)O.I.H.G.S.X.
0.4057.10.93GmaAffx.29692.1.S1_atAW348396--3e+0At4g01700chitinase, putativeO.I.H.G.S.X.
0.4057.10.97GmaAffx.58144.1.S1_atAW349047--1e+0At4g39900unknown proteinO.I.H.G.S.X.
0.3853.30.96GmaAffx.91563.1.S1_atCF807288--1e+0At3g02493RTFL19 (ROTUNDIFOLIA LIKE 19)O.I.H.G.S.X.
0.3346.10.99GmaAffx.60654.1.S1_s_atBI316139--2e-9At1g55850ATCSLE1O.I.H.G.S.X.
0.1619.70.96GmaAffx.89795.1.S1_s_atCK606628--5e+0At4g26466LRE (LORELEI)O.I.H.G.S.X.
0.1518.70.96GmaAffx.85114.1.S1_s_atAW760844--3e+0At4g26466LRE (LORELEI)O.I.H.G.S.X.
0.0710.20.96GmaAffx.86175.2.S1_atBI471498--2e-2At1g09490cinnamyl-alcohol dehydrogenase family / CAD familyO.I.H.G.S.X.
0.035.80.94GmaAffx.59462.1.S1_s_atBI469429--2e-1At4g12530protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.013.40.94GmaAffx.90168.1.S1_atCF805893--5e-3At2g36760UGT73C2 (UDP-glucosyl transferase 73C2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g24260, orthologous to the query gene, GmaAffx.29692.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5873.8At1g24260839040SEP3 (SEPALLATA3)Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.O.I.H.G.S.X.
0.9396.4At3g10570820222CYP77A6member of CYP77AO.I.H.G.S.X.
0.9396.4At5g45960834636GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.H.G.S.X.
0.9396.4At1g58430842212RXF26Encodes an anther-specific proline-rich protein.O.I.H.G.S.X.
0.9296.0At2g42990818901GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.H.G.S.X.
0.8994.6At1g63710842675CYP86A7Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers.O.I.H.G.S.X.
0.8994.6At5g55720835666pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOO.I.H.G.S.X.
0.8693.1At1g12570837814glucose-methanol-choline (GMC) oxidoreductase family proteinF:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVAO.I.H.G.S.X.
0.8592.4At2g04570814999GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.H.G.S.X.
0.8592.4At5g33370833315GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.H.G.S.X.
0.8391.4At1g01600839347CYP86A4Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers.O.I.H.G.S.X.
0.7586.9At4g14695827120unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;MFPOO.I.H.G.S.X.
0.7486.1At2g20870816620cell wall protein precursor, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMFO.I.H.G.S.X.
0.7385.5At1g75880843921family II extracellular lipase 1 (EXL1)F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOMO.I.H.G.S.X.
0.7083.5At5g22430832304unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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