Co-expression analysis

Gene ID	GmaAffx.29228.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g18470: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.04
%ile	16.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.28	39.0	0.81	GmaAffx.29228.1.S1_at	BU965501	-	-	2e-1	At3g18470	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.85	Gma.10184.1.A1_at	AW309727	-	-	3e+0	At1g56700	pyrrolidone-carboxylate peptidase family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.87	Gma.3187.1.S1_at	BG508905	-	-	2e-4	At1g15710	prephenate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.88	Gma.12996.1.A1_at	AW306798	-	-	3e-4	At3g09820	ADK1 (adenosine kinase 1)	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.84	GmaAffx.79139.1.S1_at	BM309694	-	-	3e-16	At1g73590	PIN1 (PIN-FORMED 1)	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.86	GmaAffx.69644.1.S1_at	BQ740607	-	-	2e-8	At5g56010	HSP81-3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	99.1	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
8.1	99.0	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.5	98.9	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.4	98.9	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.7	98.7	GSM182030	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.4	98.6	GSM182029	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.3	98.6	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.9	98.5	GSM182040	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.7	98.4	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.6	98.3	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.5	98.3	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.4	98.2	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.4	98.2	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.4	98.2	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.3	98.2	GSM182039	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.2	98.1	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.9	98.0	GSM147945	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.9	98.0	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.9	98.0	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.8	97.9	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.7	97.8	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.7	97.8	GSM147955	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.4	97.6	GSM147940	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.4	97.6	GSM147939	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.4	97.6	GSM191084	Soybean_Cotyledon_EPD2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.4	97.6	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.3	97.5	GSM147943	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.3	97.5	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.3	97.5	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.2	97.4	GSM191075	Soybean_Cotyledon_EP1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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