Co-expression analysis

Gene ID	GmaAffx.2892.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g24400: auxin-responsive protein, putative / small auxin up RNA (SAUR_D) (HF=4e-1)
Module size	9 genes
NF	0.51
%ile	81.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	0.95	GmaAffx.2892.2.S1_at	AW831940	-	-	4e-1	At2g24400	auxin-responsive protein, putative / small auxin up RNA (SAUR_D)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.96	GmaAffx.1301.88.S1_s_at	BG041563	-	-	4e-12	At5g15600	SP1L4 (SPIRAL1-LIKE4)	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.97	Gma.11254.1.S1_x_at	CD391589	-	-	9e+0	At5g45040	cytochrome c6 (ATC6)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.96	GmaAffx.34174.1.S1_at	BF071699	-	-	6e-30	At3g17840	RLK902	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.97	Gma.11254.3.S1_a_at	BF069978	-	-	4e+0	At4g13790	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.96	Gma.11254.1.S1_a_at	CD391589	-	-	9e+0	At5g45040	cytochrome c6 (ATC6)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.96	GmaAffx.69661.1.S1_at	BQ741578	-	-	2e-30	At1g16860	merozoite surface protein-related	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.96	GmaAffx.80309.1.S1_at	AW756161	-	-	2e-8	At1g74690	IQD31 (IQ-domain 31)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.96	GmaAffx.79679.1.S1_at	BG155341	-	-	3e-32	At3g61130	GAUT1 (GALACTURONOSYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	97.7	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.3	97.5	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.3	97.5	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.1	97.3	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.0	97.2	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.0	97.2	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.9	97.1	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.9	97.1	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.8	97.0	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.8	97.0	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.8	97.0	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.7	96.8	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.6	96.7	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.6	96.7	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.5	96.6	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.4	96.4	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.4	96.4	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.3	96.2	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.2	96.0	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.2	96.0	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.2	96.0	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.2	96.0	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.0	95.6	GSM237070	Soy_non-shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.0	95.6	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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