Co-expression analysis

Gene ID GmaAffx.27899.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g02500: SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) (HF=1e-2)
Module size 24 genes
NF 0.19
%ile 41.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.98100.00.94GmaAffx.27899.1.A1_atBI968454--1e-2At1g02500SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)O.I.H.G.S.X.
0.2939.00.97Gma.2057.1.S1_atCD396004--6e-5At2g30440chloroplast thylakoidal processing peptidaseO.I.H.G.S.X.
0.2329.90.97Gma.682.1.S1_atCD393902--2e-23At5g41390-O.I.H.G.S.X.
0.2329.90.97Gma.8341.1.S1_atBQ628883--3e-11At1g07030mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.2329.90.96Gma.8172.1.A1_atBU548935--4e+0At3g52940FK (FACKEL)O.I.H.G.S.X.
0.2228.10.97GmaAffx.18418.1.S1_atBI426634--8e-1At5g07475plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.2126.60.98Gma.9712.2.S1_atCA936743--6e-3At1g22020SHM6 (serine hydroxymethyltransferase 6)O.I.H.G.S.X.
0.2126.60.96Gma.1372.1.S1_atAW309996--7e-51At3g44110ATJ3O.I.H.G.S.X.
0.2025.10.97Gma.4404.1.S1_s_atAW100956bZIP transcription factor bZIP59-4e-2At3g62422CPuORF3 (Conserved peptide upstream open reading frame 3)O.I.H.G.S.X.
0.2025.10.96GmaAffx.27610.1.S1_s_atBI426859--2e+0At1g29040unknown proteinO.I.H.G.S.X.
0.1822.30.97Gma.2660.1.S1_atBE657176--9e-13At1g69060heat shock protein bindingO.I.H.G.S.X.
0.1721.20.98GmaAffx.84305.1.S1_atBG509116--5e-7At4g19140unknown proteinO.I.H.G.S.X.
0.1721.20.98Gma.7382.1.A1_atBE819929--4e+0At2g24320unknown proteinO.I.H.G.S.X.
0.1721.20.98Gma.2142.1.S1_atBM085231--9e-25At4g14950unknown proteinO.I.H.G.S.X.
0.1619.70.97Gma.3542.1.A1_s_atAW349631--5e-2At2g38360PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)O.I.H.G.S.X.
0.1619.70.98Gma.10421.1.S1_atCD416251--2e-21At5g63870PP7 (SERINE/THREONINE PHOSPHATASE 7)O.I.H.G.S.X.
0.1518.70.98Gma.827.1.S1_atAW310266--2e-6At3g52560UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)O.I.H.G.S.X.
0.1518.70.98GmaAffx.90199.1.A1_atCF806975--1e-44At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.1518.70.98GmaAffx.42647.1.S1_atBE820409--6e-10At3g16760tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.1316.30.98Gma.827.2.S1_x_atBQ742526--7e-40At2g36060ubiquitin-conjugating enzyme family proteinO.I.H.G.S.X.
0.1114.20.98Gma.3692.1.S1_atBE659812--2e+0At1g32990PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)O.I.H.G.S.X.
0.1114.20.97Gma.2528.1.S1_atAW306814--2e-7At3g26780catalyticO.I.H.G.S.X.
0.1013.00.97Gma.6554.2.S1_atBQ627729--3e+0At2g38620CDKB1O.I.H.G.S.X.
0.0912.00.97Gma.5868.1.S1_atBU084222--7e-10At1g19650SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.897.0GSM209597susceptible_24hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.496.4GSM209596resistant_24hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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