Co-expression analysis

Gene ID	GmaAffx.26700.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g29930: basic helix-loop-helix (bHLH) family protein (HF=3e+0)
Module size	6 genes
NF	0.08
%ile	24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.95	GmaAffx.26700.2.S1_at	BE211421	-	-	3e+0	At4g29930	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.98	PsAffx.psHB012xF21f_s_at	PsAffx.psHB012xF21f	-	-	9e-25	At2g19520	FVE	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.98	Gma.2819.2.S1_at	BG510963	-	-	4e-16	At1g72550	tRNA synthetase beta subunit family protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.98	GmaAffx.91918.1.S1_at	CF807643	-	-	4e-149	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.98	GmaAffx.90608.1.S1_s_at	CF806333	-	-	5e-102	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.98	Gma.5672.9.S1_at	AW781478	-	-	2e-102	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	97.0	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.8	97.0	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.6	96.7	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.5	96.6	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

Inter-species module comparison

A co-expression module including the grape gene, 1617046_at, orthologous to the query gene, GmaAffx.26700.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	61.5	1617046_at	At4g29930	hypothetical protein LOC100244517	-	2e-1	At1g68160	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	1609341_s_at	At4g29930	hypothetical protein LOC100265359	-	2e-3	At5g40630	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1607300_at	At4g29930	-	-	9e-51	At2g47650	UXS4 (UDP-XYLOSE SYNTHASE 4)	O.I.	H.G.	S.X.	Please select
0.59	80.6	1618973_s_at	At4g29930	hypothetical protein LOC100267103	-	1e+0	At3g61560	reticulon family protein (RTNLB6)	O.I.	H.G.	S.X.	Please select
0.58	79.8	1620264_x_at	At4g29930	-	-	2e-1	At5g10860	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	1621187_s_at	At4g29930	-	-	8e+0	At5g50345	-	O.I.	H.G.	S.X.	Please select
0.53	75.2	1609907_x_at	At4g29930	-	-	8e+0	At5g50345	-	O.I.	H.G.	S.X.	Please select
0.44	64.1	1609380_x_at	At4g29930	-	-	8e-10	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1609196_at	At4g29930	hypothetical protein LOC100256073	-	3e-1	At3g14020	NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1608451_at	At4g29930	-	-	5e-22	At3g25220	FKBP15-1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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