Co-expression analysis

Gene ID	GmaAffx.26700.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g29930: basic helix-loop-helix (bHLH) family protein (HF=3e+0)
Module size	6 genes
NF	0.08
%ile	24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.95	GmaAffx.26700.2.S1_at	BE211421	-	-	3e+0	At4g29930	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.98	PsAffx.psHB012xF21f_s_at	PsAffx.psHB012xF21f	-	-	9e-25	At2g19520	FVE	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.98	Gma.2819.2.S1_at	BG510963	-	-	4e-16	At1g72550	tRNA synthetase beta subunit family protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.98	GmaAffx.91918.1.S1_at	CF807643	-	-	4e-149	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.98	GmaAffx.90608.1.S1_s_at	CF806333	-	-	5e-102	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.98	Gma.5672.9.S1_at	AW781478	-	-	2e-102	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	97.0	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.8	97.0	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.6	96.7	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.5	96.6	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.82855.1.S1_at, orthologous to the query gene, GmaAffx.26700.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.82855.1.S1_at	At4g29930	-	-	2e-1	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	O.I.	H.G.	S.X.	Please select
0.04	5.8	Ta.11991.1.A1_at	At4g29930	-	-	2e+0	At4g08895	inorganic phosphate transporter family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	Ta.10255.1.A1_s_at	At4g29930	-	-	4e+0	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	O.I.	H.G.	S.X.	Please select
0.02	3.6	Ta.25764.1.S1_at	At4g29930	-	-	6e+0	At5g67070	RALFL34 (ralf-like 34)	O.I.	H.G.	S.X.	Please select
0.02	3.6	Ta.567.1.A1_a_at	At4g29930	-	-	3e-1	At1g54820	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.30645.1.S1_s_at	At4g29930	-	-	3e-3	At1g72080	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage