Co-expression analysis

Gene ID GmaAffx.26700.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g29930: basic helix-loop-helix (bHLH) family protein (HF=3e+0)
Module size 6 genes
NF 0.08
%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.95GmaAffx.26700.2.S1_atBE211421--3e+0At4g29930basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.1417.50.98PsAffx.psHB012xF21f_s_atPsAffx.psHB012xF21f--9e-25At2g19520FVEO.I.H.G.S.X.
0.1013.00.98Gma.2819.2.S1_atBG510963--4e-16At1g72550tRNA synthetase beta subunit family proteinO.I.H.G.S.X.
0.1013.00.98GmaAffx.91918.1.S1_atCF807643--4e-149At1g56070LOS1O.I.H.G.S.X.
0.047.00.98GmaAffx.90608.1.S1_s_atCF806333--5e-102At4g15900PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)O.I.H.G.S.X.
0.035.80.98Gma.5672.9.S1_atAW781478--2e-102At1g54270EIF4A-2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.897.0GSM309530storage protein suppression expt, RNAi biol rep2, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.897.0GSM309557storage protein suppression expt, RNAi biol rep1, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.696.7GSM309531storage protein suppression expt, RNAi biol rep2, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.596.6GSM309529storage protein suppression expt, RNAi biol rep1, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.93776.1.S1_s_at, orthologous to the query gene, GmaAffx.26700.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7393.6PtpAffx.93776.1.S1_s_atAt4g29930--3e-1At1g01310allergen V5/Tpx-1-related family proteinO.I.H.G.S.X.
0.5884.2PtpAffx.159062.1.S1_s_atAt4g29930hypothetical protein-4e-7At3g22990LFR (LEAF AND FLOWER RELATED)O.I.H.G.S.X.
0.5279.4PtpAffx.131613.1.S1_s_atAt4g29930actin related protein-2e-21At1g18450ATARP4O.I.H.G.S.X.
0.4369.7PtpAffx.113098.1.S1_s_atAt4g29930hypothetical protein-7e-8At2g26060emb1345 (embryo defective 1345)O.I.H.G.S.X.
0.4268.6PtpAffx.126669.1.S1_atAt4g29930hypothetical protein-1e+0At3g54320WRI1 (WRINKLED 1)O.I.H.G.S.X.
0.3964.6PtpAffx.3977.1.S1_s_atAt4g29930hypothetical protein-2e-18At5g52040ATRSP41O.I.H.G.S.X.
0.3458.3PtpAffx.205436.1.S1_atAt4g29930hypothetical protein-9e-2At2g01710DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3255.2PtpAffx.90488.1.S1_atAt4g29930hypothetical protein-4e+0At5g67620unknown proteinO.I.H.G.S.X.
0.3255.2PtpAffx.136933.1.S1_s_atAt4g29930hypothetical protein-3e-5At1g64350SEH1HO.I.H.G.S.X.
0.3052.0Ptp.4375.1.S1_s_atAt4g29930hypothetical protein-9e-24At4g18330eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putativeO.I.H.G.S.X.
0.2747.1PtpAffx.43198.1.S1_s_atAt4g29930hypothetical protein-7e-70At3g11540SPY (SPINDLY)O.I.H.G.S.X.
0.2441.8PtpAffx.8652.2.S1_atAt4g29930hypothetical protein-3e-57At1g78900VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)O.I.H.G.S.X.
0.2340.5PtpAffx.213851.1.S1_atAt4g29930hypothetical protein-7e-26At4g15570MAA3 (MAGATAMA 3)O.I.H.G.S.X.
0.2034.6PtpAffx.132468.1.S1_s_atAt4g29930--4e-1At3g12140emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.1729.1Ptp.1271.3.S1_a_atAt4g29930hypothetical protein-6e-33At5g64200ATSC35O.I.H.G.S.X.
0.1423.5PtpAffx.134857.1.S1_atAt4g29930hypothetical protein-2e-43At2g32080PUR ALPHA-1O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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