Co-expression analysis

Gene ID	GmaAffx.25859.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g29500: 17.6 kDa class I small heat shock protein (HSP17.6B-CI) (HF=8e-1)
Module size	6 genes
NF	0.28
%ile	53.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.86	GmaAffx.25859.1.S1_at	AW569963	-	-	8e-1	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.91	GmaAffx.23850.2.S1_at	AW568266	-	-	1e+0	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.92	Gma.17937.1.S1_at	BE823976	-	-	1e+0	At4g17510	UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3)	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.98	GmaAffx.82263.1.S1_s_at	AW568454	-	-	9e-1	At5g63600	FLS5 (FLAVONOL SYNTHASE 5)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.94	GmaAffx.35952.1.S1_at	BE823689	-	-	3e-4	At5g59720	HSP18.2 (heat shock protein 18.2)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.94	Gma.3000.1.S1_at	BE657172	-	-	3e+0	At4g25845	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.6	99.7	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
18.6	99.7	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
15.2	99.6	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
14.8	99.6	GSM309345	transgenic RNAiOleosin, biol rep 2, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
14.7	99.6	GSM309346	transgenic RNAiOleosin, biol rep 2, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
14.5	99.6	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
14.5	99.6	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
14.3	99.6	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
14.1	99.6	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
14.0	99.6	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
13.3	99.5	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
13.1	99.5	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage