Co-expression analysis

Gene ID GmaAffx.25527.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g38800: ATMTN1 (HF=3e+0)
Module size 9 genes
NF 0.35
%ile 63.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5979.50.94GmaAffx.25527.1.S1_atBM525182--3e+0At4g38800ATMTN1O.I.H.G.S.X.
0.5374.20.95HgAffx.15698.1.S1_atCB281296--4e+0At2g26670TED4 (REVERSAL OF THE DET PHENOTYPE 4)O.I.H.G.S.X.
0.5071.70.95GmaAffx.15790.1.A1_atCD405768--2e+0At1g70790C2 domain-containing proteinO.I.H.G.S.X.
0.3346.10.94GmaAffx.90297.1.S1_atCF806022--5e+0At5g434502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.3346.10.96PsAffx.psHB004xH08f_atPsAffx.psHB004xH08f--5e+0At3g61840unknown proteinO.I.H.G.S.X.
0.3243.70.95GmaAffx.93289.1.S1_atCF809014--2e-33At3g26370unknown proteinO.I.H.G.S.X.
0.2329.90.96HgAffx.19033.4.A1_atCK350593--6e-2At1g54410dehydrin family proteinO.I.H.G.S.X.
0.2329.90.96GmaAffx.14602.1.S1_atBM731566--2e-1At3g45851unknown proteinO.I.H.G.S.X.
0.2228.10.94GmaAffx.91615.1.S1_atCF807340--9e-5At1g09020SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.798.7GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
5.998.5GSM191087Soybean_Cotyledon_II1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.598.3GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
4.497.6GSM201113Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.197.3GSM191084Soybean_Cotyledon_EPD2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.197.3GSM147947Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.097.2GSM201106Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.997.1GSM191086Soybean_Cotyledon_HI2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.997.1GSM201107Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.997.1GSM201099Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.696.7GSM147935Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.596.6GSM201104Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.496.4GSM201109Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.496.4GSM201097Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.396.2GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM147939Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.396.2GSM191085Soybean_Cotyledon_HI1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.296.0GSM29216318-1009.1A.R006L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM201098Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.296.0GSM29443186_2456.2J.R220P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM201118Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.195.8GSM147953Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.195.8GSM201105Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.095.6GSM191083Soybean_Cotyledon_EPD1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.095.6GSM201100Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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