Co-expression analysis

Gene ID	GmaAffx.25445.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g01990: auxin efflux carrier family protein (HF=9e-10)
Module size	23 genes
NF	0.19
%ile	42.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.92	GmaAffx.25445.1.S1_at	AW156230	-	-	9e-10	At5g01990	auxin efflux carrier family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.96	Gma.8773.1.S1_at	BE657861	-	-	1e-21	At3g43220	phosphoinositide phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.96	GmaAffx.16182.1.S1_s_at	AW508093	-	-	4e+0	At5g18150	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.97	Gma.3583.1.S1_at	BI974551	-	-	3e-9	At4g23630	BTI1 (VIRB2-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.91	Gma.6920.1.S1_s_at	BE610331	-	-	2e+0	At4g07675	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.96	Gma.4171.1.S1_at	CD401267	-	-	1e-79	At5g17060	ATARFB1B	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.97	Gma.7062.1.S1_at	AW734156	-	-	2e-26	At4g34450	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	Gma.8018.1.S1_at	CD409445	-	-	3e-17	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.95	Gma.6005.1.A1_at	BM188184	-	-	3e-1	At5g61510	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.96	Gma.3680.1.A1_at	CD396844	-	-	2e-6	At1g07705	transcription regulator	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.97	Gma.3728.2.S1_at	AW507696	-	-	6e-1	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.97	Gma.7810.1.S1_at	BG237707	-	-	7e-12	At5g20165	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	Gma.11287.1.S1_at	AW830063	-	-	1e-12	At1g76200	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.94	Gma.4677.1.A1_at	CD406122	-	-	7e-21	At1g68070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.97	GmaAffx.38201.1.A1_at	CA782213	-	-	2e+1	Atmg00840	-	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.97	GmaAffx.91276.1.S1_at	CF807001	-	-	7e-1	At5g48440	oxidoreductase	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.95	Gma.3856.1.S1_at	BE822875	-	-	4e+0	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.98	Gma.4356.1.S1_a_at	BI942101	-	-	2e-99	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.96	GmaAffx.16411.1.S1_at	AW597927	-	-	6e+0	At3g55010	PUR5	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.96	Gma.13373.1.A1_at	CD398686	-	-	1e+0	At1g75060	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.94	Gma.6238.1.S1_at	BQ612387	-	-	2e+0	At2g39010	PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.96	Gma.17752.1.S1_at	BU551241	-	-	1e-4	At4g24330	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.96	Gma.7271.1.S1_at	AW351017	-	-	2e-9	At5g07120	SNX2b (SORTING NEXIN 2b)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	98.7	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.4	98.6	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.0	98.5	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.5	98.3	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.4	98.2	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.2	98.1	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.1	98.1	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.0	98.0	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.0	98.0	GSM201120	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.9	98.0	GSM201121	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.9	98.0	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.8	97.9	GSM201108	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.8	97.9	GSM201119	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.8	97.9	GSM201127	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.7	97.8	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.7	97.8	GSM201112	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.6	97.7	GSM201115	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.6	97.7	GSM201110	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.5	97.7	GSM201129	Whole Seed at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.5	97.7	GSM201116	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.5	97.7	GSM201126	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.5	97.7	GSM191091	Soybean_Cotyledon_SEED1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.5	97.7	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.4	97.6	GSM201109	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.4	97.6	GSM191092	Soybean_Cotyledon_SEED2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.4	97.6	GSM201117	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.3	97.5	GSM201114	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.2	97.4	GSM191083	Soybean_Cotyledon_EPD1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.2	97.4	GSM201113	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.2	97.4	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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