Co-expression analysis

Gene ID	GmaAffx.25145.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g08560: SYP111 (SYNTAXIN OF PLANTS 111) (HF=2e-23)
Module size	6 genes
NF	0.62
%ile	91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.95	GmaAffx.25145.1.A1_at	AW830552	-	-	2e-23	At1g08560	SYP111 (SYNTAXIN OF PLANTS 111)	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.95	Gma.8420.1.S1_at	D50871.1	mitotic cyclin b1-type	-	2e-4	At4g37490	CYCB1	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.95	Gma.16501.2.S1_at	BG881473	-	-	3e-4	At4g31840	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.92	GmaAffx.8707.1.S1_at	AI443601	-	-	1e+0	At2g27285	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.96	GmaAffx.6998.1.S1_at	BU551247	-	-	1e+0	At5g50190	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.94	Gma.14112.1.A1_at	BE821492	-	-	2e+0	At4g12190	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.5	99.5	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
12.2	99.5	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
12.2	99.5	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
11.9	99.4	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
11.5	99.4	GSM258500	Soybean shoot apical meristem, 6 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
11.5	99.4	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
11.4	99.4	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
11.3	99.4	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
11.3	99.4	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
11.2	99.4	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
11.1	99.4	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
10.9	99.4	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
10.5	99.3	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
8.2	99.0	GSM258505	Soybean shoot apical meristem, 6 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.7	96.8	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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