Co-expression analysis

Gene ID GmaAffx.24451.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At4g36380: ROT3 (ROTUNDIFOLIA 3) (HF=3e-1)
Module size 6 genes
NF 0.05
%ile 19.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.92GmaAffx.24451.1.A1_atBU550405--3e-1At4g36380ROT3 (ROTUNDIFOLIA 3)O.I.H.G.S.X.
0.2939.00.97Gma.8373.2.S1_a_atBG157302--1e+0At4g26550-O.I.H.G.S.X.
0.1013.00.95Gma.3510.1.S1_atBE658828transcription factor-4e-11At2g03340WRKY3O.I.H.G.S.X.
0.035.80.97Gma.6930.1.S1_atBI968658--4e+0At4g17200F-box family proteinO.I.H.G.S.X.
0.035.80.96Gma.8313.1.S1_atBG511731--7e-1At1g29410PAI3 (phosphoribosylanthranilate isomerase 3)O.I.H.G.S.X.
0.024.50.96Gma.2104.1.S1_atCA783411--3e+0At2g37000TCP family transcription factor, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.198.1GSM209591mock_0hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.497.6GSM209584susceptible_6hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.397.5GSM209594resistant_12hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.397.5GSM209585resistant_12hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.197.3GSM209593susceptible_6hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.097.2GSM209578resistant_24hours_rep1 *failed QC*GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.997.1GSM209583resistant_6hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.696.7GSM209595susceptible_12hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.596.6GSM209588susceptible_24hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.496.4GSM209592resistant_6hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.496.4GSM209596resistant_24hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.195.8GSM209577susceptible_12hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.095.6GSM209587resistant_24hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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