Co-expression analysis

Gene ID	GmaAffx.24451.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g36380: ROT3 (ROTUNDIFOLIA 3) (HF=3e-1)
Module size	6 genes
NF	0.05
%ile	19.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.92	GmaAffx.24451.1.A1_at	BU550405	-	-	3e-1	At4g36380	ROT3 (ROTUNDIFOLIA 3)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.97	Gma.8373.2.S1_a_at	BG157302	-	-	1e+0	At4g26550	-	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.95	Gma.3510.1.S1_at	BE658828	transcription factor	-	4e-11	At2g03340	WRKY3	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.97	Gma.6930.1.S1_at	BI968658	-	-	4e+0	At4g17200	F-box family protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.96	Gma.8313.1.S1_at	BG511731	-	-	7e-1	At1g29410	PAI3 (phosphoribosylanthranilate isomerase 3)	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.96	Gma.2104.1.S1_at	CA783411	-	-	3e+0	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	98.1	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.4	97.6	GSM209584	susceptible_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.3	97.5	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.3	97.5	GSM209585	resistant_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.1	97.3	GSM209593	susceptible_6hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.0	97.2	GSM209578	resistant_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.9	97.1	GSM209583	resistant_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.6	96.7	GSM209595	susceptible_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.5	96.6	GSM209588	susceptible_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.4	96.4	GSM209592	resistant_6hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.4	96.4	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.1	95.8	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.0	95.6	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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