Co-expression analysis

Gene ID	GmaAffx.24353.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g28590: protein kinase family protein (HF=8e-10)
Module size	45 genes
NF	0.61
%ile	90.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.6	0.92	GmaAffx.24353.3.S1_at	BG043550	-	-	8e-10	At2g28590	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.81	91.7	0.94	GmaAffx.61590.1.S1_at	AW780775	-	-	6e-3	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.96	Gma.7203.1.S1_at	CD397435	-	-	6e-1	At3g20900	unknown protein	O.I.	H.G.	S.X.	Please select
0.78	90.6	0.94	Gma.15829.4.S1_s_at	AW832473	-	-	6e-1	At5g02480	-	O.I.	H.G.	S.X.	Please select
0.76	89.7	0.94	GmaAffx.88496.1.S1_at	BG789457	-	-	1e-39	At3g22290	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.96	GmaAffx.75679.1.S1_at	BU577998	-	-	2e-42	At5g09690	magnesium transporter CorA-like family protein (MRS2-7)	O.I.	H.G.	S.X.	Please select
0.70	87.1	0.94	GmaAffx.88494.1.S1_at	CA936448	-	-	2e-5	At3g58040	SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2)	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.95	GmaAffx.92317.1.S1_s_at	CF808042	-	-	2e-54	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.95	GmaAffx.77531.1.S1_at	BI425602	-	-	6e-3	At4g21540	SPHK1 (SPHINGOSINE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.68	86.4	0.95	GmaAffx.7575.1.S1_at	AW756573	-	-	9e-10	At1g08030	unknown protein	O.I.	H.G.	S.X.	Please select
0.68	86.4	0.94	Gma.16968.1.S1_at	BF325365	-	-	2e+0	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.68	86.4	0.95	Gma.16532.1.S1_at	CD416295	-	-	4e-1	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.93	GmaAffx.86728.2.S1_at	BM526546	-	-	6e-2	At2g17240	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.96	GmaAffx.91290.1.S1_s_at	CF806951	hypothetical LOC547651	-	2e-2	At5g25360	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.94	Gma.15815.1.S1_at	CD407076	-	-	3e-76	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.95	Gma.9509.1.S1_at	BU550018	-	-	1e-16	At1g29400	AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.95	GmaAffx.26760.1.S1_at	BF009889	-	-	3e-4	At2g02970	nucleoside phosphatase family protein / GDA1/CD39 family protein	O.I.	H.G.	S.X.	Please select
0.64	83.4	0.95	Gma.8731.1.S1_at	BI471096	-	-	4e-4	At3g58490	phosphatidic acid phosphatase family protein / PAP2 family protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.95	Gma.1467.1.S1_at	CA935021	-	-	2e-42	At4g39910	ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3)	O.I.	H.G.	S.X.	Please select
0.62	82.1	0.95	Gma.9509.2.S1_at	BE058737	-	-	8e-24	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.95	Gma.2221.1.S1_a_at	BQ628321	-	-	4e-13	At1g05960	binding	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.95	Gma.12124.1.S1_at	BG650294	-	-	5e-19	At4g14500	-	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.95	GmaAffx.86728.1.S1_at	BI967919	-	-	3e-7	At4g20380	zinc finger protein (LSD1)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.94	GmaAffx.91270.1.S1_s_at	CF806995	-	-	6e-5	At5g13060	ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.94	Gma.5939.2.S1_at	BU760891	-	-	2e-21	At5g22000	RHF2A (RING-H2 GROUP F2A)	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.94	GmaAffx.10045.1.S1_at	BM892318	-	-	5e-3	At5g22000	RHF2A (RING-H2 GROUP F2A)	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.95	GmaAffx.92643.1.S1_at	CF808368	-	-	5e-6	At3g02250	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.92	Gma.17849.1.S1_at	AI960043	-	-	5e+0	At4g31130	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.94	GmaAffx.51723.1.A1_at	BU549842	-	-	1e-16	At2g41980	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.94	Gma.9509.2.S1_x_at	BE058737	-	-	8e-24	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.94	GmaAffx.4543.1.S1_at	BQ628994	-	-	1e+0	At5g46490	disease resistance protein (TIR-NBS class), putative	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.95	GmaAffx.64295.1.S1_at	BI426771	-	-	2e+0	At3g48930	EMB1080 (embryo defective 1080)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.94	GmaAffx.73577.1.S1_at	BM953867	-	-	5e-2	At1g77765	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.95	Gma.10215.1.S1_a_at	AY263347.1	protein kinase Pti1	-	1e-73	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.94	GmaAffx.37736.1.S1_at	AW832101	-	-	3e-5	At1g36050	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.93	GmaAffx.91559.1.S1_s_at	CF807284	-	-	2e+0	At1g69090	F-box family protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.95	GmaAffx.85277.1.S1_at	BM892315	-	-	5e-56	At5g01960	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.94	Gma.445.1.A1_at	AI443309	-	-	2e+0	At5g15940	binding / catalytic/ oxidoreductase	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.96	GmaAffx.78222.1.A1_at	BU551229	-	-	2e-36	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.95	GmaAffx.23909.1.S1_at	BU549105	-	-	2e-18	At5g66210	CPK28	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.95	Gma.8030.1.S1_at	BI970353	-	-	1e-1	At2g02970	nucleoside phosphatase family protein / GDA1/CD39 family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.96	Gma.8356.1.S1_at	BG237884	-	-	1e-1	At2g03070	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.95	GmaAffx.36315.1.S1_at	BU548126	-	-	5e-4	At4g08330	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.96	Gma.4443.1.S1_at	AW348382	-	-	6e+0	At5g23903	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.96	Gma.16713.1.S1_at	BI470471	-	-	1e-24	At5g48970	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
30.2	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
29.4	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
28.4	99.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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