Co-expression analysis

Gene ID	GmaAffx.21787.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g07580: DNA binding / transcription factor (HF=6e-1)
Module size	6 genes
NF	0.01
%ile	4.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	65.5	0.84	GmaAffx.21787.1.A1_at	AW348555	-	-	6e-1	At5g07580	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.86	GmaAffx.10790.1.S1_at	BU965333	-	-	3e-13	At2g36570	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.88	GmaAffx.35464.1.A1_at	BE657554	-	-	3e+0	At2g02026	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.85	Gma.14966.1.A1_at	CD416359	-	-	3e-6	At4g00430	PIP1	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.87	Gma.6434.1.S1_at	BQ612772	-	-	8e-2	At2g24440	selenium binding	O.I.	H.G.	S.X.	Please select
-	1.4	0.83	GmaAffx.30960.1.S1_at	BE608150	-	-	9e-1	At1g72420	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	99.2	GSM201116	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.7	99.1	GSM201117	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.3	98.6	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.9	98.5	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.3	97.5	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.1	97.3	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.8	97.0	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.8	97.0	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.7	96.8	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.7	96.8	GSM191085	Soybean_Cotyledon_HI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.6	96.7	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage