CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.21491.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g49480: ATCP1 (Ca2+-binding protein 1) (HF=3e+0)

Module size 7 genes

NF 0.47

%ile 77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 79.5 0.98 GmaAffx.21491.1.S1_at AW832637 - - 3e+0 At5g49480 ATCP1 (Ca2+-binding protein 1) O.I. H.G. S.X.
0.53 74.2 0.98 GmaAffx.80509.1.S1_at BQ610707 - - 2e-1 At5g63520 - O.I. H.G. S.X.
0.53 74.2 0.98 Gma.8643.2.S1_at BG652817 - - 1e-9 At3g09740 SYP71 (SYNTAXIN OF PLANTS 71) O.I. H.G. S.X.
0.46 65.5 0.98 Gma.1752.3.S1_a_at AW569205 - - 5e-2 At4g04860 DER2.2 (DERLIN-2.2) O.I. H.G. S.X.
0.44 63.3 0.98 GmaAffx.69670.1.S1_at BQ742118 - - 7e-5 At4g22670 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) O.I. H.G. S.X.
0.30 40.4 0.98 GmaAffx.91473.1.S1_at CF807198 - - 3e-22 At4g28860 ckl4 (Casein Kinase I-like 4) O.I. H.G. S.X.
0.25 32.6 0.98 GmaAffx.40419.1.S1_at BF325410 - - 1e-11 At3g03570 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 96.4 GSM293247 34_C066.1P.R9P2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM294244 92_2340.2H.R202P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293911 5_2236.2E.R249P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the maize gene, Zm.13705.1.A1_at, orthologous to the query gene, GmaAffx.21491.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 86.5 Zm.13705.1.A1_at At5g49480 - - 9e-7 At3g55770 LIM domain-containing protein O.I. H.G. S.X.
0.60 77.8 Zm.5979.1.A1_at At5g49480 MYB-like protein E1 - 2e+0 At2g35980 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) O.I. H.G. S.X.
0.56 74.4 Zm.17748.1.S1_s_at At5g49480 protein kinase-like - 2e+0 At1g80865 unknown protein O.I. H.G. S.X.
0.44 55.7 Zm.1942.1.A1_at At5g49480 - - 7e-57 At5g49460 ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2) O.I. H.G. S.X.
0.41 49.7 Zm.5181.1.A1_at At5g49480 CK2 protein kinase alpha 2 - 1e-82 At2g23080 casein kinase II alpha chain, putative O.I. H.G. S.X.
0.40 48.5 Zm.202.1.S1_at At5g49480 gibberellin responsive1 - 3e+0 At5g40620 unknown protein O.I. H.G. S.X.
0.32 33.4 Zm.5476.1.S1_at At5g49480 T-complex protein 1 subunit epsilon - 4e-80 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative O.I. H.G. S.X.
0.31 31.6 Zm.5987.1.A1_at At5g49480 cysteine protease 1 - 7e-14 At5g43060 cysteine proteinase, putative / thiol protease, putative O.I. H.G. S.X.
0.29 28.1 Zm.10086.1.A1_x_at At5g49480 - - 3e-1 At3g63110 ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3) O.I. H.G. S.X.
0.25 21.3 Zm.2635.1.A1_at At5g49480 hypothetical protein LOC100216945 - 7e-9 At5g63040 unknown protein O.I. H.G. S.X.
0.23 18.6 Zm.6511.1.A1_at At5g49480 - - 9e-1 At1g49940 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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