Co-expression analysis

Gene ID	GmaAffx.21491.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g49480: ATCP1 (Ca2+-binding protein 1) (HF=3e+0)
Module size	7 genes
NF	0.47
%ile	77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	79.5	0.98	GmaAffx.21491.1.S1_at	AW832637	-	-	3e+0	At5g49480	ATCP1 (Ca2+-binding protein 1)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	GmaAffx.80509.1.S1_at	BQ610707	-	-	2e-1	At5g63520	-	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	Gma.8643.2.S1_at	BG652817	-	-	1e-9	At3g09740	SYP71 (SYNTAXIN OF PLANTS 71)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.1752.3.S1_a_at	AW569205	-	-	5e-2	At4g04860	DER2.2 (DERLIN-2.2)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	GmaAffx.69670.1.S1_at	BQ742118	-	-	7e-5	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	GmaAffx.91473.1.S1_at	CF807198	-	-	3e-22	At4g28860	ckl4 (Casein Kinase I-like 4)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	GmaAffx.40419.1.S1_at	BF325410	-	-	1e-11	At3g03570	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	96.4	GSM293247	34_C066.1P.R9P2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM294244	92_2340.2H.R202P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.84500.1.S1_at, orthologous to the query gene, GmaAffx.21491.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.84500.1.S1_at	At5g49480	-	-	4e+0	At2g45126	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.1942.3.S1_at	At5g49480	-	-	1e+0	At1g68350	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	TaAffx.69941.1.S1_at	At5g49480	-	-	1e+0	At2g22080	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	TaAffx.52516.1.S1_at	At5g49480	-	-	1e+1	At5g41400	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.27979.1.S1_at	At5g49480	-	-	4e+0	At5g28590	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.00	0.7	Ta.6170.3.S1_x_at	At5g49480	-	-	2e-2	At4g09520	catalytic/ metal ion binding / phosphoglycerate mutase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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