CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.21491.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g49480: ATCP1 (Ca2+-binding protein 1) (HF=3e+0)

Module size 7 genes

NF 0.47

%ile 77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 79.5 0.98 GmaAffx.21491.1.S1_at AW832637 - - 3e+0 At5g49480 ATCP1 (Ca2+-binding protein 1) O.I. H.G. S.X.
0.53 74.2 0.98 GmaAffx.80509.1.S1_at BQ610707 - - 2e-1 At5g63520 - O.I. H.G. S.X.
0.53 74.2 0.98 Gma.8643.2.S1_at BG652817 - - 1e-9 At3g09740 SYP71 (SYNTAXIN OF PLANTS 71) O.I. H.G. S.X.
0.46 65.5 0.98 Gma.1752.3.S1_a_at AW569205 - - 5e-2 At4g04860 DER2.2 (DERLIN-2.2) O.I. H.G. S.X.
0.44 63.3 0.98 GmaAffx.69670.1.S1_at BQ742118 - - 7e-5 At4g22670 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) O.I. H.G. S.X.
0.30 40.4 0.98 GmaAffx.91473.1.S1_at CF807198 - - 3e-22 At4g28860 ckl4 (Casein Kinase I-like 4) O.I. H.G. S.X.
0.25 32.6 0.98 GmaAffx.40419.1.S1_at BF325410 - - 1e-11 At3g03570 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 96.4 GSM293247 34_C066.1P.R9P2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM294244 92_2340.2H.R202P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293911 5_2236.2E.R249P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g49480, orthologous to the query gene, GmaAffx.21491.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At5g49480 835008 ATCP1 (Ca2+-binding protein 1) AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl. O.I. H.G. S.X.
0.50 65.3 At2g29420 817491 ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid. O.I. H.G. S.X.
0.50 65.3 At4g34131 829559 UGT73B3 (UDP-glucosyl transferase 73B3) F:quercetin 3-O-glucosyltransferase activity, transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:response to cyclopentenone, response to other organism;C:endomembrane system;PMBVOF O.I. H.G. S.X.
0.44 57.2 At4g13180 826932 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:response to arsenic;C:unknown;BOMFPAV O.I. H.G. S.X.
0.40 50.8 At1g55920 842043 ATSERAT2 Encodes a chloroplast/cytosol localized serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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