Co-expression analysis

Gene ID	GmaAffx.20650.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g55150: F-box family protein (HF=3e-1)
Module size	6 genes
NF	0.12
%ile	32.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.91	GmaAffx.20650.1.S1_at	BM093029	-	-	3e-1	At5g55150	F-box family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.8354.1.S1_at	BE658968	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.98	Gma.5103.1.S1_at	BI968925	-	-	2e-59	At1g80500	-	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.98	Gma.6696.1.S1_at	BI970794	-	-	2e-36	At5g23300	PYRD (pyrimidine d)	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	GmaAffx.19843.1.S1_at	BU550809	-	-	2e+0	At3g60966	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	Gma.10782.1.S1_s_at	CD410674	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	95.6	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem

Inter-species module comparison

A co-expression module including the grape gene, 1618278_at, orthologous to the query gene, GmaAffx.20650.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1618278_at	At5g55150	-	-	4e+0	At5g53486	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1608726_at	At5g55150	hypothetical protein LOC100258243	-	4e+0	At5g10620	-	O.I.	H.G.	S.X.	Please select
0.18	19.4	1621297_at	At5g55150	-	-	5e+0	At4g08949	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	1622336_at	At5g55150	hypothetical protein LOC100261441	-	5e+0	At4g29280	LCR22 (Low-molecular-weight cysteine-rich 22)	O.I.	H.G.	S.X.	Please select
0.13	13.3	1608150_at	At5g55150	-	-	2e-3	At4g32520	SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.07	7.8	1609550_s_at	At5g55150	hypothetical protein LOC100257178	-	1e-21	At5g20290	40S ribosomal protein S8 (RPS8A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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