Co-expression analysis

Gene ID GmaAffx.20650.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g55150: F-box family protein (HF=3e-1)
Module size 6 genes
NF 0.12
%ile 32.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.91GmaAffx.20650.1.S1_atBM093029--3e-1At5g55150F-box family proteinO.I.H.G.S.X.
0.4057.10.98Gma.8354.1.S1_atBE658968--4e-22At3g03070NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.1417.50.98Gma.5103.1.S1_atBI968925--2e-59At1g80500-O.I.H.G.S.X.
0.1114.20.98Gma.6696.1.S1_atBI970794--2e-36At5g23300PYRD (pyrimidine d)O.I.H.G.S.X.
0.069.00.98GmaAffx.19843.1.S1_atBU550809--2e+0At3g60966protein binding / zinc ion bindingO.I.H.G.S.X.
0.069.00.98Gma.10782.1.S1_s_atCD410674--0At1g56070LOS1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.095.6GSM237068Soy_shoot apical meristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.222223.1.S1_at, orthologous to the query gene, GmaAffx.20650.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.2PtpAffx.222223.1.S1_atAt5g55150--4e-11At4g15240fringe-related proteinO.I.H.G.S.X.
0.2747.1PtpAffx.24429.2.S1_a_atAt5g55150hypothetical protein-1e+0At1g23860RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21)O.I.H.G.S.X.
0.035.2PtpAffx.203939.1.S1_atAt5g55150hypothetical protein-7e-117At5g16210HEAT repeat-containing proteinO.I.H.G.S.X.
0.035.2PtpAffx.9948.2.S1_a_atAt5g55150hypothetical protein-7e-2At2g16770DNA binding / transcription factorO.I.H.G.S.X.
0.012.2PtpAffx.13946.1.A1_atAt5g55150hypothetical protein-5e-7At4g33625unknown proteinO.I.H.G.S.X.
0.012.2Ptp.1725.1.A1_atAt5g55150--2e+0At4g28450nucleotide binding / protein bindingO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage