Co-expression analysis

Gene ID GmaAffx.20650.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g55150: F-box family protein (HF=3e-1)
Module size 6 genes
NF 0.12
%ile 32.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.91GmaAffx.20650.1.S1_atBM093029--3e-1At5g55150F-box family proteinO.I.H.G.S.X.
0.4057.10.98Gma.8354.1.S1_atBE658968--4e-22At3g03070NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.1417.50.98Gma.5103.1.S1_atBI968925--2e-59At1g80500-O.I.H.G.S.X.
0.1114.20.98Gma.6696.1.S1_atBI970794--2e-36At5g23300PYRD (pyrimidine d)O.I.H.G.S.X.
0.069.00.98GmaAffx.19843.1.S1_atBU550809--2e+0At3g60966protein binding / zinc ion bindingO.I.H.G.S.X.
0.069.00.98Gma.10782.1.S1_s_atCD410674--0At1g56070LOS1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.095.6GSM237068Soy_shoot apical meristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HV05H24u_x_at, orthologous to the query gene, GmaAffx.20650.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8694.8HV05H24u_x_atAt5g55150--5e+0At3g44784unknown proteinO.I.H.G.S.X.
0.7489.1Contig12302_atAt5g55150--1e-2At5g62440-O.I.H.G.S.X.
0.6885.1Contig1784_atAt5g55150--4e-2At3g46660UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12)O.I.H.G.S.X.
0.6784.7Contig18901_atAt5g55150--1e+0Atmg00990-O.I.H.G.S.X.
0.6681.5Contig13313_atAt5g55150--2e-3At2g46910plastid-lipid associated protein PAP / fibrillin family proteinO.I.H.G.S.X.
0.6380.3Contig7649_atAt5g55150--2e+0At1g52342unknown proteinO.I.H.G.S.X.
0.6178.7Contig10081_atAt5g55150--2e+0At4g28365plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.6077.3Contig7147_atAt5g55150--1e-8At4g32060calcium-binding EF hand family proteinO.I.H.G.S.X.
0.6077.3Contig8542_atAt5g55150--9e-1At1g22980unknown proteinO.I.H.G.S.X.
0.5774.9Contig10146_atAt5g55150--3e+0At5g05520outer membrane OMP85 family proteinO.I.H.G.S.X.
0.5774.9Contig5953_atAt5g55150--2e-10At1g10470ARR4 (RESPONSE REGULATOR 4)O.I.H.G.S.X.
0.5674.3Contig26463_atAt5g55150--2e+0At4g30830unknown proteinO.I.H.G.S.X.
0.5674.3HV06I09u_atAt5g55150--4e+0At3g57090BIGYINO.I.H.G.S.X.
0.5268.3Contig5515_atAt5g55150--6e+0At4g24980-O.I.H.G.S.X.
0.4762.2Contig7887_atAt5g55150--2e+0At5g66640DAR3 (DA1-RELATED PROTEIN 3)O.I.H.G.S.X.
0.4762.2Contig2925_atAt5g55150--1e-28At5g55160SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)O.I.H.G.S.X.
0.4762.2Contig12593_atAt5g55150--2e-4At2g07360SH3 domain-containing proteinO.I.H.G.S.X.
0.4762.2Contig3276_s_atAt5g55150CesA2 protein-2e-2At4g28890protein binding / ubiquitin-protein ligase/ zinc ion bindingO.I.H.G.S.X.
0.4559.3Contig7885_atAt5g55150--2e-16At1g66330senescence-associated family proteinO.I.H.G.S.X.
0.4559.3Contig8967_atAt5g55150--8e-62At3g27925DEGP1 (DegP protease 1)O.I.H.G.S.X.
0.4458.9rbaal30k13_s_atAt5g55150--2e+0At5g20120unknown proteinO.I.H.G.S.X.
0.4255.2Contig7625_atAt5g55150--4e-1At5g36659-O.I.H.G.S.X.
0.4153.9Contig10944_atAt5g55150--1e-4At3g59760OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)O.I.H.G.S.X.
0.4153.9Contig11057_atAt5g55150--1e+0At3g18870mitochondrial transcription termination factor-related / mTERF-relatedO.I.H.G.S.X.
0.4153.9Contig1394_atAt5g55150--0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.3950.5Contig9113_atAt5g55150--2e-26At5g11980conserved oligomeric Golgi complex component-related / COG complex component-relatedO.I.H.G.S.X.
0.3849.5Contig9119_s_atAt5g55150--1e-1At3g09250DNA binding / nucleaseO.I.H.G.S.X.
0.3849.5HVSMEc0012C08r2_atAt5g55150--8e-1At1g57540unknown proteinO.I.H.G.S.X.
0.3849.5Contig5736_atAt5g55150--7e-30At3g11710ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)O.I.H.G.S.X.
0.3545.1Contig4425_atAt5g55150--5e+0At5g14670ATARFA1B (ADP-ribosylation factor A1B)O.I.H.G.S.X.
0.3443.6Contig8086_atAt5g55150--2e+0At5g21430DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3240.3Contig22786_atAt5g55150--9e+0At5g36710unknown proteinO.I.H.G.S.X.
0.3037.0Contig25159_atAt5g55150--8e-12At2g35800mitochondrial substrate carrier family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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