Co-expression analysis

Gene ID	GmaAffx.20650.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g55150: F-box family protein (HF=3e-1)
Module size	6 genes
NF	0.12
%ile	32.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.91	GmaAffx.20650.1.S1_at	BM093029	-	-	3e-1	At5g55150	F-box family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.8354.1.S1_at	BE658968	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.98	Gma.5103.1.S1_at	BI968925	-	-	2e-59	At1g80500	-	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.98	Gma.6696.1.S1_at	BI970794	-	-	2e-36	At5g23300	PYRD (pyrimidine d)	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	GmaAffx.19843.1.S1_at	BU550809	-	-	2e+0	At3g60966	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	Gma.10782.1.S1_s_at	CD410674	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	95.6	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem

Inter-species module comparison

A co-expression module including the barley gene, HV05H24u_x_at, orthologous to the query gene, GmaAffx.20650.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.8	HV05H24u_x_at	At5g55150	-	-	5e+0	At3g44784	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	89.1	Contig12302_at	At5g55150	-	-	1e-2	At5g62440	-	O.I.	H.G.	S.X.	Please select
0.68	85.1	Contig1784_at	At5g55150	-	-	4e-2	At3g46660	UGT76E12 (UDP-GLUCOSYL TRANSFERASE 76E12)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig18901_at	At5g55150	-	-	1e+0	Atmg00990	-	O.I.	H.G.	S.X.	Please select
0.66	81.5	Contig13313_at	At5g55150	-	-	2e-3	At2g46910	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig7649_at	At5g55150	-	-	2e+0	At1g52342	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig10081_at	At5g55150	-	-	2e+0	At4g28365	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig7147_at	At5g55150	-	-	1e-8	At4g32060	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig8542_at	At5g55150	-	-	9e-1	At1g22980	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig10146_at	At5g55150	-	-	3e+0	At5g05520	outer membrane OMP85 family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig5953_at	At5g55150	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig26463_at	At5g55150	-	-	2e+0	At4g30830	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	HV06I09u_at	At5g55150	-	-	4e+0	At3g57090	BIGYIN	O.I.	H.G.	S.X.	Please select
0.52	68.3	Contig5515_at	At5g55150	-	-	6e+0	At4g24980	-	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig7887_at	At5g55150	-	-	2e+0	At5g66640	DAR3 (DA1-RELATED PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig2925_at	At5g55150	-	-	1e-28	At5g55160	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig12593_at	At5g55150	-	-	2e-4	At2g07360	SH3 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig3276_s_at	At5g55150	CesA2 protein	-	2e-2	At4g28890	protein binding / ubiquitin-protein ligase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig7885_at	At5g55150	-	-	2e-16	At1g66330	senescence-associated family protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig8967_at	At5g55150	-	-	8e-62	At3g27925	DEGP1 (DegP protease 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	rbaal30k13_s_at	At5g55150	-	-	2e+0	At5g20120	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig7625_at	At5g55150	-	-	4e-1	At5g36659	-	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig10944_at	At5g55150	-	-	1e-4	At3g59760	OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig11057_at	At5g55150	-	-	1e+0	At3g18870	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig1394_at	At5g55150	-	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig9113_at	At5g55150	-	-	2e-26	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig9119_s_at	At5g55150	-	-	1e-1	At3g09250	DNA binding / nuclease	O.I.	H.G.	S.X.	Please select
0.38	49.5	HVSMEc0012C08r2_at	At5g55150	-	-	8e-1	At1g57540	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig5736_at	At5g55150	-	-	7e-30	At3g11710	ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig4425_at	At5g55150	-	-	5e+0	At5g14670	ATARFA1B (ADP-ribosylation factor A1B)	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig8086_at	At5g55150	-	-	2e+0	At5g21430	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig22786_at	At5g55150	-	-	9e+0	At5g36710	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig25159_at	At5g55150	-	-	8e-12	At2g35800	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage