Co-expression analysis

Gene ID	GmaAffx.19179.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g11770: nucleic acid binding (HF=9e-1)
Module size	6 genes
NF	0.04
%ile	16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.93	GmaAffx.19179.1.S1_at	BM528604	-	-	9e-1	At3g11770	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	GmaAffx.45956.1.S1_at	BG238301	-	-	2e-4	At1g17160	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.97	GmaAffx.65538.1.S1_s_at	CA783421	-	-	2e+0	At5g58260	-	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.98	Gma.11922.1.S1_at	AW394565	-	-	3e+0	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.98	GmaAffx.40735.1.S1_at	BG315862	MYB transcription factor MYB130	-	4e-7	At3g49850	TRB3 (TELOMERE REPEAT BINDING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.98	GmaAffx.71902.1.S1_at	BE607717	-	-	3e-1	At5g58680	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	98.1	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.2328.1.S1_at, orthologous to the query gene, GmaAffx.19179.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	Ptp.2328.1.S1_at	At3g11770	-	-	1e+1	Atmg00480	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.222058.1.S1_at	At3g11770	hypothetical protein	-	2e+0	At2g43060	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.5364.2.A1_a_at	At3g11770	hypothetical protein	-	4e-25	At1g11890	SEC22	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.126575.1.S1_at	At3g11770	-	-	9e-9	At3g07565	DNA binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.218047.1.S1_at	At3g11770	hypothetical protein	-	2e+0	At4g02380	SAG21 (SENESCENCE-ASSOCIATED GENE 21)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.203066.1.S1_x_at	At3g11770	hypothetical protein	-	8e-22	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.201537.1.S1_s_at	At3g11770	hypothetical protein	-	2e-3	At1g69790	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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