Co-expression analysis

Gene ID GmaAffx.1912.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g29125: RTFL2 (ROTUNDIFOLIA LIKE 2) (HF=3e-1)
Module size 49 genes
NF 0.31
%ile 57.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.98100.00.89GmaAffx.1912.1.A1_atBU761863--3e-1At2g29125RTFL2 (ROTUNDIFOLIA LIKE 2)O.I.H.G.S.X.
0.5172.30.97Gma.10892.4.S1_x_atCD403449--3e-101At2g42740RPL16AO.I.H.G.S.X.
0.4968.30.97Gma.3871.1.S1_atAW349536--2e-27At3g18410NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.4766.60.97Gma.4208.2.S1_s_atCD401340--2e-34At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.4563.90.96Gma.105.1.S1_atU70535.1SGF14C-2e-44At2g42590GRF9 (GENERAL REGULATORY FACTOR 9)O.I.H.G.S.X.
0.4463.30.97GmaAffx.55834.1.S1_s_atBQ453267--2e+0At5g16710DHAR3 (dehydroascorbate reductase 1)O.I.H.G.S.X.
0.4360.60.97GmaAffx.93249.1.S1_atCF807720--5e-35At4g3467040S ribosomal protein S3A (RPS3aB)O.I.H.G.S.X.
0.4360.60.97Gma.11251.2.S1_atCD400392--1e-90At2g3448060S ribosomal protein L18A (RPL18aB)O.I.H.G.S.X.
0.4360.60.97Gma.11251.1.S1_s_atCD396884--2e-95At2g3448060S ribosomal protein L18A (RPL18aB)O.I.H.G.S.X.
0.4360.60.97Gma.15823.1.S1_s_atCD396136--5e-30At3g5954060S ribosomal protein L38 (RPL38B)O.I.H.G.S.X.
0.4360.60.97Gma.2921.1.A1_s_atCD417900--4e-6At3g5602060S ribosomal protein L41 (RPL41G)O.I.H.G.S.X.
0.4259.30.97Gma.17246.1.S1_s_atCD402136--2e-12At1g2688060S ribosomal protein L34 (RPL34A)O.I.H.G.S.X.
0.4158.10.98Gma.15407.2.S1_s_atBU763329--4e-38At1g69410ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)O.I.H.G.S.X.
0.4158.10.98GmaAffx.90664.1.S1_s_atCF809097--4e-35At1g35550elongation factor Tu C-terminal domain-containing proteinO.I.H.G.S.X.
0.4158.10.95GmaAffx.89191.1.A1_s_atCK606438--1e-20At3g0852060S ribosomal protein L41 (RPL41D)O.I.H.G.S.X.
0.4158.10.97GmaAffx.1301.31.S1_s_atBI317354--1e-11At1g30230elongation factor 1-beta / EF-1-betaO.I.H.G.S.X.
0.3954.50.97Gma.11398.2.A1_s_atCD413467--2e-21At1g70490ARFA1DO.I.H.G.S.X.
0.3853.30.97Gma.2534.2.S1_s_atCD393721--2e-76At4g02890UBQ14O.I.H.G.S.X.
0.3751.70.97GmaAffx.91487.1.S1_x_atCF807212elongation factor 1A SMV resistance-related protein-2e-114At5g60390elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.3751.70.96Gma.10892.4.S1_s_atCD403449--3e-101At2g42740RPL16AO.I.H.G.S.X.
0.3751.70.98Gma.2053.1.S1_atBE209499--5e-56At5g4876060S ribosomal protein L13A (RPL13aD)O.I.H.G.S.X.
0.3650.80.94GmaAffx.93289.1.S1_atCF809014--2e-33At3g26370unknown proteinO.I.H.G.S.X.
0.3650.80.97Gma.10892.4.S1_atCD403449--3e-101At2g42740RPL16AO.I.H.G.S.X.
0.3346.10.97Gma.1449.1.S1_atAY157740.1nucleoside diphosphate kinase-5e-41At4g09320NDPK1O.I.H.G.S.X.
0.3243.70.96Gma.17600.1.S1_s_atBI700789--2e-9At2g19680mitochondrial ATP synthase g subunit family proteinO.I.H.G.S.X.
0.3243.70.97Gma.4111.4.A1_x_atBI426730--3e+0At4g29300LCR27 (Low-molecular-weight cysteine-rich 27)O.I.H.G.S.X.
0.3142.20.97Gma.5706.1.S1_atBI967978--2e-56At4g02580NADH-ubiquinone oxidoreductase 24 kDa subunit, putativeO.I.H.G.S.X.
0.3142.20.97GmaAffx.91487.1.S1_atCF807212elongation factor 1A SMV resistance-related protein-2e-114At5g60390elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.3040.40.98Gma.10577.1.S1_x_atCD416202--7e-49At1g23290RPL27ABO.I.H.G.S.X.
0.2939.00.98Gma.9951.1.S1_atBM085764--3e-7At4g34700complex 1 family protein / LVR family proteinO.I.H.G.S.X.
0.2939.00.95Gma.7287.1.S1_atBE823827--2e-10At5g24400emb2024 (embryo defective 2024)O.I.H.G.S.X.
0.2839.00.97GmaAffx.88908.1.A1_x_atCK605775--2e-28At5g59880ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)O.I.H.G.S.X.
0.2839.00.98Gma.10722.1.S1_atBE823336triosephosphate isomerase-1e-11At3g55440TPI (TRIOSEPHOSPHATE ISOMERASE)O.I.H.G.S.X.
0.2839.00.96GmaAffx.61061.1.S1_s_atCA782177--1e+1At5g27260unknown proteinO.I.H.G.S.X.
0.2839.00.95GmaAffx.66388.1.S1_atAW277435--3e+0At3g51880HMGB1 (HIGH MOBILITY GROUP B 1)O.I.H.G.S.X.
0.2735.70.97Gma.6512.1.S1_atAW733220--2e-4At4g16830nuclear RNA-binding protein (RGGA)O.I.H.G.S.X.
0.2735.70.95Gma.13580.1.S1_s_atBQ611050Tubulin A-1e-116At1g50010TUA2O.I.H.G.S.X.
0.2633.90.97Gma.10751.2.S1_atAW153136--4e-13At2g42680MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)O.I.H.G.S.X.
0.2532.60.93Gma.6472.1.S1_atBM091717--1e+0At4g18620-O.I.H.G.S.X.
0.2532.60.96GmaAffx.16182.1.S1_s_atAW508093--4e+0At5g18150unknown proteinO.I.H.G.S.X.
0.2430.90.94GmaAffx.28644.1.S1_atBQ298909--3e+0At3g07600heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2430.90.97GmaAffx.39303.1.S1_atBG047377--5e-14At5g54430universal stress protein (USP) family proteinO.I.H.G.S.X.
0.2329.90.97Gma.11287.1.S1_atAW830063--1e-12At1g76200unknown proteinO.I.H.G.S.X.
0.2126.60.96Gma.10350.1.A1_atBU547543--6e-9At5g26751ATSK11O.I.H.G.S.X.
0.1822.30.96Gma.10996.1.S1_atBE822720--4e-16At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.1822.30.96GmaAffx.90362.1.A1_atCF806087--4e-28At1g11890SEC22O.I.H.G.S.X.
0.1518.70.94Gma.13497.1.A1_atCD399574--7e-1At1g78815LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)O.I.H.G.S.X.
0.1316.30.95GmaAffx.72771.1.A1_atBG511599--4e-26At1g10240FRS11 (FAR1-related sequence 11)O.I.H.G.S.X.
0.1114.20.96Gma.14379.1.A1_atCD412090--7e-1At3g11770nucleic acid bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.698.7GSM201106Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
6.598.7GSM201100Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
6.498.6GSM201101Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
6.498.6GSM201097Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
6.298.6GSM201096Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.998.5GSM182035Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.998.5GSM201103Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.798.4GSM147939Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.798.4GSM147945Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.698.3GSM147940Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.398.2GSM147941Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.398.2GSM201099Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.398.2GSM201104Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.398.2GSM201098Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.398.2GSM147944Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.398.2GSM147946Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.298.1GSM201107Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.198.1GSM201105Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.198.1GSM201113Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.198.1GSM201102Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.897.9GSM182032Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.797.8GSM201114Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.797.8GSM191084Soybean_Cotyledon_EPD2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.797.8GSM147937Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.797.8GSM182036Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.697.7GSM201110Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.697.7GSM201118Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.697.7GSM147934Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.697.7GSM147950Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.597.7GSM147949Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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