Co-expression analysis

Gene ID	GmaAffx.18415.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g62660: GATL7 (Galacturonosyltransferase-like 7) (HF=5e-5)
Module size	35 genes
NF	0.30
%ile	56.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	92.6	0.83	GmaAffx.18415.1.S1_at	BI426447	-	-	5e-5	At3g62660	GATL7 (Galacturonosyltransferase-like 7)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.91	Gma.17844.1.S1_at	BM307334	-	-	2e+0	At2g28755	UDP-D-glucuronate carboxy-lyase-related	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.88	GmaAffx.90437.1.S1_at	CF806162	-	-	7e-110	At1g04820	TUA4	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.89	GmaAffx.6418.1.S1_at	CA935147	-	-	2e+0	At4g23432	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.91	Gma.5323.1.A1_s_at	CD402653	-	-	4e-41	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.93	GmaAffx.2378.1.S1_at	BG652106	-	-	1e-18	At3g54560	HTA11	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.92	Gma.8298.1.S1_at	CD392694	-	-	8e-14	At4g27910	SDG16 (SET DOMAIN PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.92	Gma.1975.3.S1_at	CD393546	-	-	4e-29	At5g59910	HTB4	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.90	GmaAffx.84844.1.S1_at	AW458869	-	-	2e+0	At1g19710	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.92	Gma.15513.3.S1_x_at	AW598013	-	-	1e+0	At5g64020	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.90	GmaAffx.28214.3.S1_at	AW164194	-	-	3e+0	At5g04850	VPS60.2	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.91	Gma.12833.1.A1_s_at	CD404906	-	-	1e+1	At5g50440	MEMB12 (MEMBRIN 12)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.91	Gma.5909.1.S1_at	AW348400	-	-	6e-52	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.92	Gma.12446.1.A1_at	CD411372	-	-	1e-77	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.90	Gma.6598.1.S1_at	BQ629078	-	-	1e+0	At3g18530	binding	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.92	Gma.12640.1.A1_at	CD393465	-	-	1e+1	At5g19315	-	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.93	GmaAffx.8778.1.A1_at	BG316110	-	-	5e-2	At2g17442	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.91	Gma.8991.1.S1_at	AW102564	-	-	7e+0	Atcg00540	-	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.88	Gma.11070.1.A1_at	CD412352	-	-	1e-40	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.91	Gma.4542.1.S1_at	BI967865	-	-	3e+0	At1g47490	ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.93	GmaAffx.28382.1.S1_at	BM528798	-	-	7e+0	At5g66970	GTP binding	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.90	GmaAffx.4922.1.A1_at	BI970569	-	-	3e+0	At2g47660	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.91	Gma.9049.1.S1_at	CD395235	-	-	2e+0	At2g04425	LCR82 (Low-molecular-weight cysteine-rich 82)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.92	Gma.4344.2.S1_at	BI700879	-	-	1e-79	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.92	Gma.7311.1.A1_at	BU550949	-	-	1e-3	At1g21690	emb1968 (embryo defective 1968)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.89	Gma.4721.1.A1_s_at	AW309989	-	-	9e-1	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.93	Gma.17920.1.A1_s_at	AW310315	-	-	2e-5	At5g62640	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.92	Gma.7369.1.S1_s_at	CD399383	-	-	3e-26	At3g45980	HTB9	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.94	GmaAffx.39034.1.S1_at	BE820439	-	-	3e-1	At1g71740	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.91	GmaAffx.4993.1.S1_at	BM091639	-	-	2e+0	At5g25030	ATP binding / nucleotide binding / phenylalanine-tRNA ligase	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.92	Gma.5747.2.S1_a_at	BI498317	-	-	2e-12	At1g48410	AGO1 (ARGONAUTE 1)	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.87	Gma.1896.1.S1_at	AW596955	-	-	7e-6	At3g28720	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.93	GmaAffx.13356.1.S1_at	BG237838	-	-	2e+0	At5g42060	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.93	Gma.7875.1.S1_at	BQ610129	-	-	2e+0	At3g13437	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.87	GmaAffx.52970.1.S1_at	BU548330	-	-	3e-5	At3g26935	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	99.0	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.6	98.9	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.5	98.9	GSM147945	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.3	98.9	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.3	98.9	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.2	98.9	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.2	98.9	GSM147955	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.1	98.8	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.0	98.8	GSM191084	Soybean_Cotyledon_EPD2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.0	98.8	GSM147954	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.9	98.8	GSM182039	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.8	98.7	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.8	98.7	GSM147956	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.8	98.7	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.7	98.7	GSM182040	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.4	98.6	GSM147943	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.2	98.6	GSM147944	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.2	98.6	GSM191085	Soybean_Cotyledon_HI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.2	98.6	GSM147936	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.1	98.5	GSM191083	Soybean_Cotyledon_EPD1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
6.1	98.5	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.0	98.5	GSM147942	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.8	98.4	GSM182045	Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.8	98.4	GSM182038	Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.8	98.4	GSM182046	Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.7	98.4	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.7	98.4	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.7	98.4	GSM191082	Soybean_Cotyledon_EN2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.5	98.3	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.4	98.2	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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